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Chromosomal location effects on gene sequence evolution in mammals
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scholarly article
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title
Chromosomal location effects on gene sequence evolution in mammals
(English)
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author
Giorgio Matassi
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G Matassi
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1
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author name string
P M Sharp
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2
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C Gautier
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3
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language of work or name
English
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published in
Current Biology
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volume
9
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page(s)
786-91
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issue
15
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cites work
Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
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Directional mutation pressure and neutral molecular evolution
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Why the rate of silent codon substitutions is variable within a vertebrate's genome.
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Mutation rates differ among regions of the mammalian genome
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An analysis of codon usage in mammals: selection or mutation bias?
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Evident diversity of codon usage patterns of human genes with respect to chromosome banding patterns and chromosome numbers; relation between nucleotide sequence data and cytogenetic data
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Mammalian gene evolution: nucleotide sequence divergence between mouse and rat
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The human genome: organization and evolutionary history
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Diversity in G + C content at the third position of codons in vertebrate genes and its cause
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The distribution of genes in the human genome
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Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins
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Giant G+C% mosaic structures of the human genome found by arrangement of GenBank human DNA sequences according to genetic positions.
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A boundary of long-range G + C% mosaic domains in the human MHC locus: pseudoautosomal boundary-like sequence exists near the boundary.
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Synonymous nucleotide substitution rates in mammalian genes: implications for the molecular clock and the relationship of mammalian orders
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Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions
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Impact of changes in GC content on the silent molecular clock in murids
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Nucleic acid composition, codon usage, and the rate of synonymous substitution in protein-coding genes
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Silent substitutions in mammalian genomes and their evolutionary implications
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The gene distribution of the human genome
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Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences
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An approach to the organization of eukaryotic genomes at a macromolecular level
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Compositional mapping of the human dystrophin-encoding gene
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Codon usage and genome evolution.
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Human and rodent DNA sequence comparisons: a mosaic model of genomic evolution
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Mutation pattern variation among regions of the primate genome
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Striking sequence similarity over almost 100 kilobases of human and mouse T–cell receptor DNA
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Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains
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Nucleotide sequence of the rat gamma-crystallin gene region and comparison with an orthologous human region
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Nucleotide sequence of the BALB/c mouse beta-globin complex
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Sequence and comparative analysis of the rabbit alpha-like globin gene cluster reveals a rapid mode of evolution in a G + C-rich region of mammalian genomes
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Genomic sequence comparison of the human and mouse XRCC1 DNA repair gene regions
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Sequence analysis of the ERCC2 gene regions in human, mouse, and hamster reveals three linked genes
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Analysis and Comparison of the Mouse and Human Immunoglobulin Heavy Chain JH–Cμ–Cδ Locus
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Genomic position influences spontaneous mutagenesis of an integrated retroviral vector containing the hprt cDNA as target for mutagenesis
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The hitch-hiking effect of a favourable gene
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Sequence variation: looking for effects of genetic linkage
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Effects of linkage on rates of molecular evolution
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Organization of mutations along the genome: a prime determinant of genome evolution.
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Evolutionary consequences of nonrandom damage and repair of chromatin domains
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Endogenous lesions, S-phase-independent spontaneous mutations, and evolutionary strategies for base excision repair.
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DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall.
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Focal sites of DNA repair synthesis in human chromosomes
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Selective repair of specific chromatin domains in UV-irradiated cells from xeroderma pigmentosum complementation group C.
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Basic local alignment search tool
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HOVERGEN: a database of homologous vertebrate genes
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Unbiased estimation of the rates of synonymous and nonsynonymous substitution
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
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NOTES ON CONTINUOUS STOCHASTIC PHENOMENA
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Identifiers
DOI
10.1016/S0960-9822(99)80361-3
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PubMed ID
10469563
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ResearchGate publication ID
12829592
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