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A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome
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scholarly article
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title
A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome
(English)
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main subject
bioinformatics
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Escherichia coli
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author name string
Shuo Chen
series ordinal
1
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Elena A Lesnik
series ordinal
2
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Thomas A Hall
series ordinal
3
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Rangarajan Sampath
series ordinal
4
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Richard H Griffey
series ordinal
5
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Dave J Ecker
series ordinal
6
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Lawrence B Blyn
series ordinal
7
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language of work or name
English
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publication date
2002
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stated in
PubMed
published in
BioSystems
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volume
65
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page(s)
157-77
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issue
2-3
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cites work
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
1 reference
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Crossref
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7 January 2021
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A flexible motif search technique based on generalized profiles.
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Crossref
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A computational approach to identify genes for functional RNAs in genomic sequences
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Crossref
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Regulation of gene expression by trans-encoded antisense RNAs.
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Inter-RNA homology and possible roles of small RNAs
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Oversynthesis of a new Escherichia coli small RNA suppresses export toxicity of DsbA'-PhoA unfoldable periplasmic proteins
1 reference
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reference URL
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The mechanism of intrinsic transcription termination.
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Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
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A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
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reference URL
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7 January 2021
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inferred from DOI database lookup
Prediction of rho-independent transcriptional terminators in Escherichia coli
1 reference
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Crossref
reference URL
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7 January 2021
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inferred from DOI database lookup
RNAMotif, an RNA secondary structure definition and search algorithm
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Regulation of RpoS by a novel small RNA: the characterization of RprA
1 reference
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7 January 2021
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Escherichia colipromoter sequences predictin vitroRNA polymerase selectivity
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Mechanism for the autogenous control of the crp operon: transcriptional inhibition by a divergent RNA transcript
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Computational identification of noncoding RNAs in E. coli by comparative genomics
1 reference
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Novel intergenic repeats of Escherichia coli K-12
1 reference
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Operons in Escherichia coli: genomic analyses and predictions
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RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
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7 January 2021
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The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0303-2647%2802%2900013-8
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7 January 2021
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inferred from DOI database lookup
Promoter sequences and algorithmical methods for identifying them.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0303-2647%2802%2900013-8
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7 January 2021
based on heuristic
inferred from DOI database lookup
Small RNAs in Escherichia coli.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0303-2647%2802%2900013-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of novel small RNAs using comparative genomics and microarrays
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0303-2647%2802%2900013-8
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0303-2647%2802%2900013-8
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7 January 2021
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inferred from DOI database lookup
Identifiers
DOI
10.1016/S0303-2647(02)00013-8
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2813195
OpenCitations bibliographic resource ID
2813195
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2813195
PubMed ID
12069726
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2813195
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