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Activities and mechanism of DNA polymerase beta
scientific article (publication date: 2006)
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scholarly article
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title
Activities and mechanism of DNA polymerase beta
(English)
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author name string
William A Beard
series ordinal
1
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Rajendra Prasad
series ordinal
2
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Samuel H Wilson
series ordinal
3
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language of work or name
English
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publication date
2006
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published in
Methods in Enzymology
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volume
408
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page(s)
91-107
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cites work
Expression of human DNA polymerase beta in Escherichia coli and characterization of the recombinant enzyme
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Purification and domain-mapping of mammalian DNA polymerase beta.
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Structural Insights into the Origins of DNA Polymerase Fidelity
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Influence of DNA structure on DNA polymerase beta active site function: extension of mutagenic DNA intermediates.
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Efficiency of correct nucleotide insertion governs DNA polymerase fidelity.
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Impairment of proliferating cell nuclear antigen-dependent apurinic/apyrimidinic site repair on linear DNA.
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Dynamic characterization of a DNA repair enzyme: NMR studies of [methyl-13C]methionine-labeled DNA polymerase beta.
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An attempt to unify the structure of polymerases
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Mapping of the 5'-2-deoxyribose-5-phosphate lyase active site in DNA polymerase beta by mass spectrometry
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Monitoring base excision repair by in vitro assays
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Replication protein A stimulates proliferating cell nuclear antigen-dependent repair of abasic sites in DNA by human cell extracts
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Deoxyribose phosphate excision by the N-terminal domain of the polymerase beta: the mechanism revisited
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Different DNA polymerases are involved in the short- and long-patch base excision repair in mammalian cells
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Biochemical basis of DNA replication fidelity
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Ribozyme-catalyzed and nonenzymatic reactions of phosphate diesters: rate effects upon substitution of sulfur for a nonbridging phosphoryl oxygen atom
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Protection against methylation-induced cytotoxicity by DNA polymerase beta-dependent long patch base excision repair
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DNA polymerase fidelity: kinetics, structure, and checkpoints
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Rapid segmental and subdomain motions of DNA polymerase beta.
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Second pathway for completion of human DNA base excision-repair: reconstitution with purified proteins and requirement for DNase IV (FEN1).
1 reference
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Excision of deoxyribose phosphate residues by DNA polymerase beta during DNA repair
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Base substitution specificity of DNA polymerase beta depends on interactions in the DNA minor groove
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The fidelity of DNA polymerase beta during distributive and processive DNA synthesis
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Molecular cloning and high-level expression of human polymerase beta cDNA and comparison of the purified recombinant human and rat enzymes
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Evidence for an imino intermediate in the DNA polymerase beta deoxyribose phosphate excision reaction
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Structural insight into the DNA polymerase beta deoxyribose phosphate lyase mechanism.
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Human DNA polymerase beta deoxyribose phosphate lyase. Substrate specificity and catalytic mechanism
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FEN1 stimulation of DNA polymerase beta mediates an excision step in mammalian long patch base excision repair.
1 reference
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DNA polymerase beta -mediated long patch base excision repair. Poly(ADP-ribose)polymerase-1 stimulates strand displacement DNA synthesis.
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Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism
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DNA polymerase beta conducts the gap-filling step in uracil-initiated base excision repair in a bovine testis nuclear extract.
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Properties of a Recombinant Human Uracil-DNA Glycosylase from the UNG Gene and Evidence that UNG Encodes the Major Uracil-DNA Glycosylase
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Requirement of mammalian DNA polymerase-beta in base-excision repair.
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The lyase activity of the DNA repair protein beta-polymerase protects from DNA-damage-induced cytotoxicity
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Mammalian abasic site base excision repair. Identification of the reaction sequence and rate-determining steps
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Substrate binding by human apurinic/apyrimidinic endonuclease indicates a Briggs-Haldane mechanism
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Steady-state kinetics of mouse DNA polymerase beta
1 reference
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DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase beta. Implication for the identity of the rate-limiting conformational change
1 reference
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Crossref
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Mismatch repair in human nuclear extracts. Quantitative analyses of excision of nicked circular mismatched DNA substrates, constructed by a new technique employing synthetic oligonucleotides
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Polymerase beta simulations suggest that Arg258 rotation is a slow step rather than large subdomain motions per se.
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Identifiers
DOI
10.1016/S0076-6879(06)08007-4
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
336133
OpenCitations bibliographic resource ID
336133
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
336133
PubMed publication ID
16793365
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
336133
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