Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q28271703)
Watch
English
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
scientific article
In more languages
edit
Statements
instance of
scholarly article
0 references
title
The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
(English)
0 references
author
Marc Parisien
object named as
Marc Parisien
series ordinal
1
0 references
François Major
series ordinal
2
object named as
François Major
0 references
language of work or name
English
0 references
publication date
6 March 2008
0 references
published in
Nature
0 references
volume
452
0 references
page(s)
51-5
0 references
issue
7183
0 references
cites work
Rfam: annotating non-coding RNAs in complete genomes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
RNA maps reveal new RNA classes and a possible function for pervasive transcription
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The Protein Data Bank
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
GenBank
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Bridging the gap in RNA structure prediction.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Prediction of RNA secondary structure by free energy minimization
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The accuracy of ribosomal RNA comparative structure models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Revolutions in RNA secondary structure prediction
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The combination of symbolic and numerical computation for three-dimensional modeling of RNA.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Extracting stacking interaction parameters for RNA from the data set of native structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
CONTRAfold: RNA secondary structure prediction without physics-based models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Automated de novo prediction of native-like RNA tertiary structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Automated extraction and classification of RNA tertiary structure cyclic motifs
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A discussion of the solution for the best rotation to relate two sets of vectors
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Induced fit in RNA-protein recognition
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Three-dimensional structure of a hammerhead ribozyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Induced fit and "lock and key" recognition of 5S RNA by zinc fingers of transcription factor IIIA.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
miRBase: microRNA sequences, targets and gene nomenclature
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structural basis for double-stranded RNA processing by Dicer
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The non-Watson-Crick base pairs and their associated isostericity matrices
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Conformation in solution of yeast tRNA(Asp) transcripts deprived of modified nucleotides.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Three-dimensional model of Escherichia coli ribosomal 5 S RNA as deduced from structure probing in solution and computer modeling.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
NMR evidence for dynamic secondary structure in helices II and III of the RNA of Escherichia coli.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The interaction between the iron-responsive element binding protein and its cognate RNA is highly dependent upon both RNA sequence and structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The importance of a single G in the hairpin loop of the iron responsive element (IRE) in ferritin mRNA for structure: an NMR spectroscopy study
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Rfam: an RNA family database
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An improved definition of the RNA-binding specificity of SECIS-binding protein 2, an essential component of the selenocysteine incorporation machinery
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Characterization of ribosomal frameshifting in HIV-1 gag-pol expression
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of the RNA signal essential for translational frameshifting in HIV-1
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Solution structure and thermodynamic investigation of the HIV-1 frameshift inducing element
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE06684
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1038/NATURE06684
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1205805
Dimensions Publication ID
1037958303
0 references
OpenCitations bibliographic resource ID
1205805
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1205805
PubMed ID
18322526
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1205805
ResearchGate publication ID
5528873
0 references
Springer Nature article ID
10.1038/nature06684
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit