(Q28272398)

1

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Edward A Esposito

2

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Karsten Theis

3

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Peng Gong

Progress in Molecular Biology and Translational Science

4

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language of work or name

English

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publication date

2005

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published in

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volume

80

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page(s)

323-47

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cites work

Identification of a minimal binding element within the T7 RNA polymerase promoter

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Major groove recognition elements in the middle of the T7 RNA polymerase promoter

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Promoter specificity determinants of T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Studies of promoter recognition and start site selection by T7 RNA polymerase using a comprehensive collection of promoter variants

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Hierarchy of base-pair preference in the binding domain of the bacteriophage T7 promoter

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Identification of a region of the bacteriophage T3 and T7 RNA polymerases that determines promoter specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Structure of a transcribing T7 RNA polymerase initiation complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Kinetic analysis of T7 RNA polymerase transcription initiation from promoters containing single-stranded regions

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Positioning of the start site in the initiation of transcription by bacteriophage T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Interrupting the template strand of the T7 promoter facilitates translocation of the DNA during initiation, reducing transcript slippage and the release of abortive products

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Kinetic and thermodynamic basis of promoter strength: multiple steps of transcription initiation by T7 RNA polymerase are modulated by the promoter sequence

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Binding of the priming nucleotide in the initiation of transcription by T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Interactions of T7 RNA polymerase with T7 late promoters measured by footprinting with methidiumpropyl-EDTA-iron(II).

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Interactions of the RNA polymerase of bacteriophage T7 with its promoter during binding and initiation of transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

T7 promoter release mediated by DNA scrunching

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Excitation energy transfer in DNA: duplex melting and transfer from normal bases to 2-aminopurine

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studies

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Sequence dependence of energy transfer in DNA oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Probing structure and dynamics of DNA with 2-aminopurine: effects of local environment on fluorescence

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Thermodynamic and kinetic measurements of promoter binding by T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Fluorescence characterization of the transcription bubble in elongation complexes of T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Kinetic mechanism of GTP binding and RNA synthesis during transcription initiation by bacteriophage T7 RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Equilibrium and stopped-flow kinetic studies of interaction between T7 RNA polymerase and its promoters measured by protein and 2-aminopurine fluorescence changes

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Peculiar 2-aminopurine fluorescence monitors the dynamics of open complex formation by bacteriophage T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

The energetics of consensus promoter opening by T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Tests of a model of specific contacts in T7 RNA polymerase-promoter interactions.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Structural basis for initiation of transcription from an RNA polymerase-promoter complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

The stability of abortively cycling T7 RNA polymerase complexes depends upon template conformation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

2-Aminopurine: a probe of structural dynamics and charge transfer in DNA and DNA:RNA hybrids

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Mg(2+)-dependent conformational changes in the hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Dynamics of mismatched base pairs in DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Promoter clearance by T7 RNA polymerase. Initial bubble collapse and transcript dissociation monitored by base analog fluorescence

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Characterization of structural features important for T7 RNAP elongation complex stability reveals competing complex conformations and a role for the non-template strand in RNA displacement.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

The T7 RNA polymerase intercalating hairpin is important for promoter opening during initiation but not for RNA displacement or transcription bubble stability during elongation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

The intercalating beta-hairpin of T7 RNA polymerase plays a role in promoter DNA melting and in stabilizing the melted DNA for efficient RNA synthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Cross-linking of promoter DNA to T7 RNA polymerase does not prevent formation of a stable elongation complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Studies of contacts between T7 RNA polymerase and its promoter reveal features in common with multisubunit RNA polymerases

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Insights into transcription: structure and function of single-subunit DNA-dependent RNA polymerases

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Discrimination between bacteriophage T3 and T7 promoters by the T3 and T7 RNA polymerases depends primarily upon a three base-pair region located 10 to 12 base-pairs upstream from the start site

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Substitution of a single bacteriophage T3 residue in bacteriophage T7 RNA polymerase at position 748 results in a switch in promoter specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Topological and conformational analysis of the initiation and elongation complex of t7 RNA polymerase suggests a new twist

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

1 reference

7 January 2021

On models and methods for studying polymerase translocation.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Structural transitions mediating transcription initiation by T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

A model for the mechanism of polymerase translocation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Structural and mechanistic relationships between nucleic acid polymerases

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Pre-steady-state kinetics of initiation of transcription by T7 RNA polymerase: a new kinetic model

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021

Fluorescence methods for studying the kinetics and thermodynamics of transcription initiation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2805%2980008-X

7 January 2021