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Different versions of the Dayhoff rate matrix

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Different versions of the Dayhoff rate matrix (English)

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Nick Goldman

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Carolin Kosiol

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1

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English

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publication date

February 2005

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Molecular Biology and Evolution

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22

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2

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page(s)

193-9

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Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

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Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: instability of a tree based on a single gene

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Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

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21 January 2018

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

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21 January 2018

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

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DNA sequence and comparative analysis of chimpanzee chromosome 22.

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Initial sequencing and analysis of the human genome

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The rapid generation of mutation data matrices from protein sequences

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Nineteen Dubious Ways to Compute the Exponential of a Matrix, Twenty-Five Years Later

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Initial sequencing and comparative analysis of the mouse genome

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MrBayes 3: Bayesian phylogenetic inference under mixed models

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TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

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A transition probability model for amino acid substitutions from blocks.

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Pandit: a database of protein and associated nucleotide domains with inferred trees

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A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

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PAML: a program package for phylogenetic analysis by maximum likelihood

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Models of amino acid substitution and applications to mitochondrial protein evolution.

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rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny

(Q28287721)

Different versions of the Dayhoff rate matrix

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