(Q28305549)

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Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

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scholarly article

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Europe PubMed Central

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4 March 2020

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis (English)

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4 March 2020

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based on heuristic

inferred from title

RNA-binding proteins

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based on heuristic

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corrigendum / erratum

Erratum: Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

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Robert B. Darnell

6

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4 March 2020

author name string

Michael J Moore

1

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4 March 2020

Chaolin Zhang

2

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4 March 2020

Emily Conn Gantman

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4 March 2020

Aldo Mele

4

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4 March 2020

Jennifer C Darnell

5

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4 March 2020

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9 January 2014

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4 March 2020

Nature Protocols

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4 March 2020

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4 March 2020

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4 March 2020

263-293

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4 March 2020

4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response

1 reference

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Neuronal Elav-like (Hu) proteins regulate RNA splicing and abundance to control glutamate levels and neuronal excitability

1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

20 March 2017

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1 reference

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FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism

1 reference

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1 reference

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iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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HITS-CLIP yields genome-wide insights into brain alternative RNA processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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The impact of microRNAs on protein output

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

20 March 2017

CLIP: a method for identifying protein-RNA interaction sites in living cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

20 March 2017

Evidence for reassociation of RNA-binding proteins after cell lysis: implications for the interpretation of immunoprecipitation analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

20 March 2017

CLIP identifies Nova-regulated RNA networks in the brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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LIN28A is a suppressor of ER-associated translation in embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs

1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

7 April 2017

The UCSC Genome Browser database: update 2010

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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Distribution and intensity of constraint in mammalian genomic sequence

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.012

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Transcriptome-wide miR-155 binding map reveals widespread noncanonical microRNA targeting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4156013

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1 reference

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1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2014.012

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1 reference

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1 reference

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Identifiers

10.1038/NPROT.2014.012

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24407355%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Dimensions Publication ID

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24407355%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24407355%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

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Springer Nature article ID

10.1038/nprot.2014.012

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