(Q28346265)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

title

Changes in a phospholipid bilayer induced by the hydrolysis of a phospholipase A2 enzyme: a molecular dynamics simulation study (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

molecular dynamics simulation

3 November 2019

main subject

biophysics

0 references

0 references

phospholipid bilayer

0 references

author name string

M T Hyvönen

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

P T Kovanen

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

language of work or name

English

0 references

publication date

1 February 2001

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

volume

80

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

page(s)

565-578

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

Structural aspects of interfacial adsorption. A crystallographic and site-directed mutagenesis study of the phospholipase A2 from the venom of Agkistrodon piscivorus piscivorus

3 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Interfacial binding of secreted phospholipases A(2): more than electrostatics and a major role for tryptophan

20 March 2017

1 reference

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Dynamical properties of phospholipid bilayers from computer simulation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Molecular dynamics study of substance P peptides partitioned in a sodium dodecylsulfate micelle

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Atomic force microscope imaging of phospholipid bilayer degradation by phospholipase A2

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Structure and dynamic properties of diunsaturated 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphatidylcholine lipid bilayer from molecular dynamics simulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Changes in vesicle morphology induced by lateral phase separation modulate phospholipase A2 activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

On simulating lipid bilayers with an applied surface tension: periodic boundary conditions and undulations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Proton transport across transient single-file water pores in a lipid membrane studied by molecular dynamics simulations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Incorporation of surface tension into molecular dynamics simulation of an interface: a fluid phase lipid bilayer membrane

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Role of lateral phase separation in the modulation of phospholipase A2 activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Structure and catalytic mechanism of secretory phospholipases A2.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

A comparison of DMPC- and DLPE-based lipid bilayers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Lipid bilayer heterogeneities and modulation of phospholipase A2 activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Phospholipase A2 as a mechanosensor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Modulation of Phospholipase A2: Identification of an Inactive Membrane-Bound State

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

The membrane dipole potential in a total membrane potential model. Applications to hydrophobic ion interactions with membranes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Magnitude of the solvation pressure depends on dipole potential

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Conformational analysis of the polar head group in phosphatidylcholine bilayers: a structural change induced by cations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Membrane dipole potentials, hydration forces, and the ordering of water at membrane surfaces

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Definition of the specific roles of lysolecithin and palmitic acid in altering the susceptibility of dipalmitoylphosphatidylcholine bilayers to phospholipase A2.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Regulatory functions of phospholipase A2.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

What is the surface tension of a lipid bilayer membrane?

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Commentary: surface tension of biomembranes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Molecular dynamics study of phospholipase A2 on a membrane surface.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Enhancement of Agkistrodon piscivorus piscivorus venom phospholipase A2 activity toward phosphatidylcholine vesicles by lysolecithin and palmitic acid: studies with fluorescent probes of membrane structure.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

A graphics program for the analysis and display of molecular dynamics trajectories

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Mechanism of unassisted ion transport across membrane bilayers

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Structure and dynamics of an amphiphilic peptide in a lipid bilayer: a molecular dynamics study

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Molecular details of the activation of soluble phospholipase A2 on lipid bilayers. Comparison of computer simulations with experimental results

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301257

Determination of the location of fluorescent probes attached to fatty acids using parallax analysis of fluorescence quenching: effect of carboxyl ionization state and environment on depth

27 November 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Origin of the latency phase during the action of phospholipase A2 on unmodified phosphatidylcholine vesicles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Origin of the Lag Period in the Phospholipase C Cleavage of Phospholipids in Membranes. Concomitant Vesicle Aggregation and Enzyme Activation†

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Relationships between bilayer structure and phospholipase A2 activity: interactions among temperature, diacylglycerol, lysolecithin, palmitic acid, and dipalmitoylphosphatidylcholine

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Quantification of the interactions among fatty acid, lysophosphatidylcholine, calcium, dimyristoylphosphatidylcholine vesicles, and phospholipase A2

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Interfacial catalysis by phospholipase A2: substrate specificity in vesicles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Systematic relationship between phospholipase A2 activity and dynamic lipid bilayer microheterogeneity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Activation of phospholipase A2 by freshly added lysophospholipids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Action of phospholipase A2 on bilayers. Effect of fatty acid and lysophospholipid additives on the kinetic parameters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Molecular dynamics simulation of a phospholipase A2-substrate complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Comparison of simple potential functions for simulating liquid water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Role of lipid structure in the activation of phospholipase A2 by peroxidized phospholipids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Modulation of the binding of signal peptides to lipid bilayers by dipoles near the hydrocarbon-water interface

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

Activation of porcine pancreatic phospholipase A2 by the presence of negative charges at the lipid-water interface

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976038-9

10.1016/S0006-3495(01)76038-9

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11159426%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

PubMed publication ID

11159426

1 reference