(Q28469177)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

title

Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Thomas Lengauer

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Francisco S Domingues

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

author name string

Oliver Sander

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Tobias Sing

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Peter K Cheung

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

P Richard Harrigan

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Ingolf Sommer

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

language of work or name

English

0 references

publication date

8 February 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

28 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

volume

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

page(s)

e58

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

28 December 2019

copyright license

start time

30 March 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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19 March 2017

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19 March 2017

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19 March 2017

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Alternative conformations of HIV-1 V3 loops mimic beta hairpins in chemokines, suggesting a mechanism for coreceptor selectivity

19 March 2017

1 reference

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19 March 2017

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19 March 2017

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Chemokine receptors as HIV-1 coreceptors: roles in viral entry, tropism, and disease

7 April 2017

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Structure of a V3-containing HIV-1 gp120 core

7 April 2017

1 reference

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A graph-theory algorithm for rapid protein side-chain prediction

7 April 2017

1 reference

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Emergence of CXCR4-using human immunodeficiency virus type 1 (HIV-1) variants in a minority of HIV-1-infected patients following treatment with the CCR5 antagonist maraviroc is from a pretreatment CXCR4-using virus reservoir

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

A reliable phenotype predictor for human immunodeficiency virus type 1 subtype C based on envelope V3 sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

HIV chemokine receptor inhibitors as novel anti-HIV drugs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

The HIV coreceptor switch: a population dynamical perspective

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Local feature frequency profile: a method to measure structural similarity in proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Genetic and biological properties of HIV type 1 isolates prevalent in villagers of the Cameroon equatorial rain forests and grass fields: further evidence of broad HIV type 1 genetic diversity

29 September 2017

1 reference

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PDB file parser and structure class implemented in Python

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Predicting HIV-1 coreceptor usage with sequence analysis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

High frequency of syncytium-inducing and CXCR4-tropic viruses among human immunodeficiency virus type 1 subtype C-infected patients receiving antiretroviral treatment

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

The CCR5 and CXCR4 coreceptors are both used by human immunodeficiency virus type 1 primary isolates from subtype C.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Phylogenetic and phenotypic analysis of HIV type 1 env gp120 in cases of subtype C mother-to-child transmission

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Structure modeling of the chemokine receptor CCR5: implications for ligand binding and selectivity

29 September 2017

1 reference

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MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Interrogating protein interaction networks through structural biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Improved success of phenotype prediction of the human immunodeficiency virus type 1 from envelope variable loop 3 sequence using neural networks

29 September 2017

1 reference

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Sustained performance of knowledge-based potentials in fold recognition.

29 September 2017

1 reference

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Highly potent RANTES analogues either prevent CCR5-using human immunodeficiency virus type 1 infection in vivo or rapidly select for CXCR4-using variants.

29 September 2017

1 reference

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Chemokines and HIV-1 second receptors. Confluence of two fields generates optimism in AIDS research

29 September 2017

1 reference

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Knowledge-based potentials for proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Human immunodeficiency virus type 1 clones chimeric for the envelope V3 domain differ in syncytium formation and replication capacity

29 September 2017

1 reference

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Fold recognition of the human immunodeficiency virus type 1 V3 loop and flexibility of its crown structure during the course of adaptation to a host

29 September 2017

1 reference

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Efficacy of short-term monotherapy with maraviroc, a new CCR5 antagonist, in patients infected with HIV-1.

27 November 2018

1 reference

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A new perspective on V3 phenotype prediction.

27 November 2018

1 reference

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A new method to detect related function among proteins independent of sequence and fold homology.

27 November 2018

1 reference

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HIV coreceptor usage and drug treatment.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Mapping of protein surface cavities and prediction of enzyme class by a self-organizing neural network.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1848001

Atomic contact vectors in protein‐protein recognition

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17397254

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

HIV-1 coreceptor selectivity: structural analogy between HIV-1 V3 regions and chemokine beta-hairpins is not the explanation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17397254

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Random Forests

1 reference

Astrophysics Data System

15 December 2022

https://ui.adsabs.harvard.edu/abs/2001MachL..45....5B/citations

Identifiers

DOI

10.1371/JOURNAL.PCBI.0030058

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

0 references

journals/ploscb/SanderSSLCHLD07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17397254%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

PubMed publication ID

17397254

1 reference