(Q30417607)

21 June 2017

1 reference

title

Knowledge-based potentials for proteins (English)

1 reference

21 June 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7648326

14 July 2024

fact database

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7648326

14 July 2024

author name string

M. J. Sippl

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7648326

14 July 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=7648326

14 July 2024

publication date

1 April 1995

1 reference

full work available at URL

21 June 2017

https://api.elsevier.com/content/article/PII:0959440X95800816?httpAccept=text/xml

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

https://api.elsevier.com/content/article/PII:0959440X95800816?httpAccept=text/plain

14 July 2024

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Current Opinion in Structural Biology

14 July 2024

published in

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21 June 2017

volume

5

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21 June 2017

issue

2

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21 June 2017

page(s)

229-235

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The Protein Data Bank: a computer-based archival file for macromolecular structures

21 June 2017

cites work

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1016/S0022-2836(77)80200-3

Protein folding--what's the question?

5 March 2023

1

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Structure prediction of proteins--where are we now?

14 July 2024

4

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Towards protein folding by global energy optimization

14 July 2024

5

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

14 July 2024

Protein fold recognition

6

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

14 July 2024

7

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Knowledge-Based Protein Modeling

14 July 2024

9

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins

14 July 2024

11

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

A simplified representation of protein conformations for rapid simulation of protein folding

14 July 2024

12

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Solvation energy in protein folding and binding

14 July 2024

14

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

A computer model to dynamically simulate protein folding: studies with crambin.

14 July 2024

15

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

14 July 2024

16

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Evaluation of protein models by atomic solvation preference.

14 July 2024

17

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Contact potential that recognizes the correct folding of globular proteins

14 July 2024

18

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Optimal protein-folding codes from spin-glass theory

14 July 2024

19

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Use of a potential of mean force to analyze free energy contributions in protein folding

14 July 2024

20

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

A simplified amino acid potential for use in structure predictions of proteins.

14 July 2024

21

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Measuring residue associations in protein structures. Possible implications for protein folding

14 July 2024

22

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Hamiltonians for protein tertiary structure prediction based on three-dimensional environment principles

14 July 2024

23

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

The three-dimensional profile method using residue preference as a continuous function of residue environment

14 July 2024

24

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Recognition of errors in three-dimensional structures of proteins

14 July 2024

26

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force

14 July 2024

27

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions

14 July 2024

28

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches

14 July 2024

29

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

An improved pair potential to recognize native protein folds

14 July 2024

30

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Between objectivity and subjectivity

14 July 2024

32

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Errors in three dimensions

14 July 2024

33

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Knowledge-based validation of protein structure coordinates derived by X-ray crystallography and NMR spectroscopy

14 July 2024

35

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Assessment of protein models with three-dimensional profiles

14 July 2024

36

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

An analysis of incorrectly folded protein models. Implications for structure predictions.

14 July 2024

38

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Searching protein structure databases has come of age.

14 July 2024

39

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Protein superfamilies and domain superfolds

14 July 2024

40

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

14 July 2024

41

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations

14 July 2024

42

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

A new approach to protein fold recognition

14 July 2024

43

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Topology fingerprint approach to the inverse protein folding problem

14 July 2024

44

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures

14 July 2024

45

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Three-dimensional profiles from residue-pair preferences: identification of sequences with beta/alpha-barrel fold

14 July 2024

46

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

An empirical energy function for threading protein sequence through the folding motif

14 July 2024

47

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Alignment and searching for common protein folds using a data bank of structural templates

14 July 2024

48

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

The protein threading problem with sequence amino acid interaction preferences is NP-complete

14 July 2024

50

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Hidden Markov models in computational biology. Applications to protein modeling

14 July 2024

51

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

De novo protein design using pairwise potentials and a genetic algorithm

14 July 2024

53

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

Assembly of polypeptide and protein backbone conformations from low energy ensembles of short fragments: Development of strategies and construction of models for myoglobin, lysozyme, and thymosin β4

14 July 2024

54

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

An algorithm to generate low-resolution protein tertiary structures from knowledge of secondary structure

14 July 2024

56

1 reference

https://api.crossref.org/works/10.1016/0959-440X(95)80081-6

14 July 2024

Identifiers

1 reference

21 June 2017

1 reference