(Q28474493)

3

0 references

Alessandra Carbone

object named as

Alessandra Carbone

5

0 references

Richard Lavery

object named as

Richard Lavery

4

0 references

author name string

Ladislas A Trojan

PLOS Computational Biology

2

0 references

language of work or name

English

0 references

publication date

January 2009

0 references

published in

0 references

volume

5

0 references

issue

1

0 references

page(s)

e1000267

0 references

cites work

Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Scoredist: a simple and robust protein sequence distance estimator

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Analysing six types of protein-protein interfaces

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

VMD: visual molecular dynamics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Principles of protein-protein interactions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Basic local alignment search tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Exhaustive matching of the entire protein sequence database

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Amino acid substitution matrices from protein blocks

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

19 March 2017

1 reference

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An evolutionary trace method defines binding surfaces common to protein families

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

7 April 2017

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000267

Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

ISIS: interaction sites identified from sequence.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

A family of evolution-entropy hybrid methods for ranking protein residues by importance.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Scoring residue conservation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Evolutionary predictions of binding surfaces and interactions.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Studies of protein-protein interfaces: a statistical analysis of the hydrophobic effect

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Interior and surface of monomeric proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

A note on the neighbor-joining algorithm of Saitou and Nei.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Docking of protein molecular surfaces with evolutionary trace analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

siteFiNDER|3D: a web-based tool for predicting the location of functional sites in proteins

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Asymmetric mutation rates at enzyme-inhibitor interfaces: implications for the protein-protein docking problem

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

Conservation of polar residues as hot spots at protein interfaces

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2613531

A dissection of specific and non-specific protein-protein interfaces

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000267

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000267

Structure-derived substitution matrices for alignment of distantly related sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19165315

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural clusters of evolutionary trace residues are statistically significant and common in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19165315

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dissecting protein-protein recognition sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19165315

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000267

1 reference

journals/ploscb/EngelenTSLC09

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

19165315

1 reference