(Q28474752)

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Connecting mutations of the RNA polymerase II C-terminal domain to complex phenotypic changes using combined gene expression and network analyses

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scholarly article

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Connecting mutations of the RNA polymerase II C-terminal domain to complex phenotypic changes using combined gene expression and network analyses (English)

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phenotypic change

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inferred from title

author name string

Carlyle Rogers

1

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Zhenhua Guo

2

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John W Stiller

3

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language of work or name

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publication date

30 June 2010

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5

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6

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e11386

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copyright license

Creative Commons Attribution 4.0 International

30 June 2010

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April 2022 Public Data File from Crossref

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describes a project that uses

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Cytoscape

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Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

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inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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1 reference

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based on heuristic

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10.1371/JOURNAL.PONE.0011386

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2010PLoSO...511386R

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