(Q28474887)

English

Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy

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scholarly article

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Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy (English)

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NMR spectroscopy

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3

object named as

John L Markley

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author name string

Arash Bahrami

1

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Amir H Assadi

2

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Hamid R Eghbalnia

4

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language of work or name

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publication date

March 2009

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PLOS Computational Biology

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5

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e1000307

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3

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copyright license

Creative Commons Attribution 4.0 International

13 March 2009

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April 2022 Public Data File from Crossref

copyright status

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Consistent blind protein structure generation from NMR chemical shift data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

19 March 2017

GANA--a genetic algorithm for NMR backbone resonance assignment

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

19 March 2017

Accurate and automated classification of protein secondary structure with PsiCSI

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

19 March 2017

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

19 March 2017

Probability-based protein secondary structure identification using combined NMR chemical-shift data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

19 March 2017

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

19 March 2017

The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

19 March 2017

The solution structure of eglin c based on measurements of many NOEs and coupling constants and its comparison with X‐ray structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

19 March 2017

Evaluating protein structures determined by structural genomics consortia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

7 April 2017

Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

7 April 2017

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

Structural biology by NMR: structure, dynamics, and interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Protein structure determination from NMR chemical shifts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Automated protein structure determination from NMR spectra.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Optimal isotope labelling for NMR protein structure determinations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Mars -- robust automatic backbone assignment of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

CLOUDS, a protocol for deriving a molecular proton density via NMR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Use of chemical shifts in macromolecular structure determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

New methods of structure refinement for macromolecular structure determination by NMR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Folding units in globular proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

On the use of sequence homologies to predict protein structure: identical pentapeptides can have completely different conformations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

29 September 2017

Practical model fitting approaches to the direct extraction of NMR parameters simultaneously from all dimensions of multidimensional NMR spectra.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

2 June 2018

Protein heteronuclear NMR assignments using mean-field simulated annealing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

2 June 2018

Automated analysis of protein NMR assignments using methods from artificial intelligence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

2 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2645676

2 June 2018

Automated sequence-specific NMR assignment of homologous proteins using the program GARANT.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

Automated backbone assignment of labeled proteins using the threshold accepting algorithm.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

Automated probabilistic method for assigning backbone resonances of (13C,15N)-labeled proteins.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

PACES: Protein sequential assignment by computer-assisted exhaustive search.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

A tracked approach for automated NMR assignments in proteins (TATAPRO).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

IBIS--a tool for automated sequential assignment of protein spectra from triple resonance experiments.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

Automated resonance assignment of proteins using heteronuclear 3D NMR. 2. Side chain and sequence-specific assignment.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

A protein taxonomy based on secondary structure.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

Constructing Free-Energy Approximations and Generalized Belief Propagation Algorithms

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

Correctness of local probability in graphical models with loops.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

CAMRA: chemical shift based computer aided protein NMR assignments

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000307

21 January 2018

Automated sequencing of amino acid spin systems in proteins using multidimensional HCC(CO)NH-TOCSY spectroscopy and constraint propagation methods from artificial intelligence

1 reference

https://pubmed.ncbi.nlm.nih.gov/19282963

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new strategy for structure determination of large proteins in solution without deuteration

1 reference

https://pubmed.ncbi.nlm.nih.gov/19282963

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein sequential resonance assignments by combinatorial enumeration using 13C alpha chemical shifts and their (i, i-1) sequential connectivities

1 reference

https://pubmed.ncbi.nlm.nih.gov/19282963

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence-specific assignment of aromatic resonances of uniformly 13C,15N-labeled proteins by using 13C- and 15N-edited NOESY spectra

1 reference

https://pubmed.ncbi.nlm.nih.gov/19282963

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated structure determination from NMR spectra

1 reference

https://pubmed.ncbi.nlm.nih.gov/19282963

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PCBI.1000307

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

DBLP publication ID

journals/ploscb/BahramiAME09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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