(Q28474948)

2

0 references

Zhi Ma

3

0 references

Wei Yang

4

0 references

Chunzhi Ai

full work available at URL

5

0 references

language of work or name

English

0 references

publication date

29 July 2010

0 references

https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000866&type=printable

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20686687

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20686687/?tool=EBI

17 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20686687

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20686687/pdf/?tool=EBI

17 June 2024

file format

Portable Document Format

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20686687

https://europepmc.org/articles/PMC2912339

17 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20686687

https://europepmc.org/articles/PMC2912339?pdf=render

17 June 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20686687

PLOS Computational Biology

17 June 2024

published in

0 references

volume

6

0 references

issue

7

0 references

page(s)

e1000866

0 references

copyright license

Creative Commons Attribution 4.0 International

start time

29 July 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Enhancement of the Seed-Target Recognition Step in RNA Silencing by a PIWI/MID Domain Protein

19 March 2017

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Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex

19 March 2017

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19 March 2017

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Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans

19 March 2017

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19 March 2017

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19 March 2017

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Purified Argonaute2 and an siRNA form recombinant human RISC

19 March 2017

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Principles of microRNA-target recognition

19 March 2017

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

19 March 2017

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Argonaute2 is the catalytic engine of mammalian RNAi

19 March 2017

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Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

19 March 2017

1 reference

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MicroRNAs: genomics, biogenesis, mechanism, and function

19 March 2017

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19 March 2017

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MicroRNA targets in Drosophila

21 January 2018

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Size selective recognition of siRNA by an RNA silencing suppressor

19 March 2017

1 reference

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Prediction of mammalian microRNA targets

19 March 2017

1 reference

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The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes

19 March 2017

1 reference

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Structure and conserved RNA binding of the PAZ domain

19 March 2017

1 reference

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Role of microRNAs in plant and animal development

19 March 2017

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Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate

19 March 2017

1 reference

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RNA interference is mediated by 21- and 22-nucleotide RNAs

19 March 2017

1 reference

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Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain

19 March 2017

1 reference

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The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans

19 March 2017

1 reference

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VMD: visual molecular dynamics

19 March 2017

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The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

19 March 2017

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Canonical sampling through velocity rescaling

7 April 2017

1 reference

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A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes

7 April 2017

1 reference

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Crystal structure of Argonaute and its implications for RISC slicer activity

7 April 2017

1 reference

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Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

7 April 2017

1 reference

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Essential dynamics of proteins

7 April 2017

1 reference

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Exploring protein native states and large-scale conformational changes with a modified generalized born model

7 April 2017

1 reference

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Micro RNAs are complementary to 3' UTR sequence motifs that mediate negative post-transcriptional regulation

7 April 2017

1 reference

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Reduced surface: an efficient way to compute molecular surfaces

7 April 2017

1 reference

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Revisiting the principles of microRNA target recognition and mode of action

7 April 2017

1 reference

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Getting to the root of miRNA-mediated gene silencing

29 September 2017

1 reference

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Host immune system gene targeting by a viral miRNA

29 September 2017

1 reference

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Molecular basis for target RNA recognition and cleavage by human RISC.

29 September 2017

1 reference

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In silico selection of active siRNA.

29 September 2017

1 reference

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Argonaute and RNA--getting into the groove

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Nucleic acid 3'-end recognition by the Argonaute2 PAZ domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

The RNA-induced silencing complex is a Mg2+-dependent endonuclease.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

RISC is a 5' phosphomonoester-producing RNA endonuclease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Binding of a diverse set of ligands to avidin and streptavidin: an accurate quantitative prediction of their relative affinities by a combination of molecular mechanics and continuum solvent models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Investigating protein dynamics in collective coordinate space

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Recombining the structures of HIV integrase, RuvC and RNase H.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Electrostatic interactions in macromolecules: theory and applications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Toward a system-level understanding of microRNA pathway via mathematical modeling.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319.

2 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000866

Protein thermal stability: insights from atomic displacement parameters (B values).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000866

Dynamite: a simple way to gain insight into protein motions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000866

Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000866

GROMACS: A message-passing parallel molecular dynamics implementation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000866

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000866

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000866

Molecular dynamics simulations and thermodynamics analysis of DNA-drug complexes. Minor groove binding between 4',6-diamidino-2-phenylindole and DNA duplexes in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000866

Ligand affinities predicted with the MM/PBSA method: dependence on the simulation method and the force field.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000866

Energetic decomposition with the generalized-born and Poisson-Boltzmann solvent models: lessons from association of G-protein components.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

AutoDocking dinucleotides to the HIV-1 integrase core domain: exploring possible binding sites for viral and genomic DNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Protein docking using spherical polar Fourier correlations.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Protein domain movements: detection of rigid domains and visualization of hinges in comparisons of atomic coordinates.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2912339

Improvements in the analysis of domain motions in proteins from conformational change: DynDom version 1.50

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20686687

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000866

1 reference

journals/ploscb/WangLMYA10

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

1 reference