(Q33632614)

28 July 2017

1 reference

title

Investigating protein dynamics in collective coordinate space (English)

1 reference

28 July 2017

Kitao A

1

1 reference

PubMed ID

10322205

28 July 2017

Go N

series ordinal

2

1 reference

28 July 2017

1 April 1999

1 reference

Current Opinion in Structural Biology

28 July 2017

1 reference

28 July 2017

9

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28 July 2017

164-169

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28 July 2017

2

1 reference

Simulations of CRP:(cAMP)2 in noncrystalline environments show a subunit transition from the open to the closed conformation

28 July 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Normal mode refinement: crystallographic refinement of protein dynamic structure. II. Application to human lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Normal mode refinement: crystallographic refinement of protein dynamic structure. I. Theory and test by simulated diffraction data

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Essential dynamics of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Comparison of normal mode analyses on a small globular protein in dihedral angle space and Cartesian coordinate space.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Effect of solvent on collective motions in globular protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

The consistency of large concerted motions in proteins in molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Collective variable description of native protein dynamics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Quasi-harmonic method for studying very low frequency modes in proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Protein conformational landscapes: energy minimization and clustering of a long molecular dynamics trajectory

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Projection of Monte Carlo and molecular dynamics trajectories onto the normal mode axes: human lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Harmonicity and anharmonicity in protein dynamics: a normal mode analysis and principal component analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Optimal protocol and trajectory visualization for conformational searches of peptides and proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Large-amplitude nonlinear motions in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Dynamics and relative stabilities of parallel- and antiparallel-stranded DNA duplexes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

The essential dynamics of thermolysin: Confirmation of the hinge-bending motion and comparison of simulations in vacuum and water

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Internal motions of native lysozyme are more organized than those of mutants: a principal component analysis of molecular dynamics data.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Characterizing global substates of myoglobin.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Langevin modes of macromolecules: applications to crambin and DNA hexamers

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Prediction of peptide conformation by multicanonical algorithm: New approach to the multiple-minima problem

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Conformational sampling of CDR-H3 in antibodies by multicanonical molecular dynamics simulation.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Structural basis of hierarchical multiple substates of a protein. I: Introduction.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Structural basis of hierarchical multiple substates of a protein. II: Monte Carlo simulation of native thermal fluctuations and energy minimization.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Structural basis of hierarchical multiple substates of a protein. III: Side chain and main chain local conformations.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Structural basis of hierarchical multiple substates of a protein. IV: Rearrangements in atom packing and local deformations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Structural basis of hierarchical multiple substates of a protein. V: Nonlocal deformations.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Harmonic and anharmonic aspects in the dynamics of BPTI: a normal mode analysis and principal component analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Multi-basin dynamics of a protein in a crystal environment

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Model-free methods of analyzing domain motions in proteins from simulation: a comparison of normal mode analysis and molecular dynamics simulation of lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Efficient Monte Carlo method for simulation of fluctuating conformations of native proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

An efficient method for sampling the essential subspace of proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Calculation of hydration free energy for a solute with many atomic sites using the RISM theory: A robust and efficient algorithm

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

On the use of normal modes in thermal parameter refinement: theory and application to the bovine pancreatic trypsin inhibitor

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

Collective NMR relaxation model applied to protein dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2899%2980023-2

7 January 2021

10.1016/S0959-440X(99)80023-2

Identifiers

DOI

1 reference

28 July 2017

1 reference

PubMed ID

10322205