(Q28476559)

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Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans

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Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans (English)

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Caenorhabditis elegans

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based on heuristic

inferred from title

Haemonchus contortus

object named as

Haemonchus contortus

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inferred from title

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based on heuristic

inferred from title

Matthew Berriman

10

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5

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object named as

Gary Saunders

4

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Anna V Protasio

object named as

Anna V Protasio

3

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object named as

Martin Hunt

2

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object named as

Roz Laing

1

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Michael Andrew Quail

8

object named as

Michael Quail

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author name string

Steven Laing

6

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Frank Jackson

7

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Robin Beech

9

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John S Gilleard

11

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language of work or name

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publication date

2011

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6

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8

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e23216

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copyright license

Creative Commons Attribution 4.0 International

15 August 2011

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April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

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based on heuristic

inferred from title

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

Haemonchus contortus acetylcholine receptors of the DEG-3 subfamily and their role in sensitivity to monepantel

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

Draft genome of the filarial nematode parasite Brugia malayi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

Inositol monophosphatase regulates localization of synaptic components and behavior in the mature nervous system of C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

Artemis: sequence visualization and annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

Genome sequence of the nematode C. elegans: a platform for investigating biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

Fourfold faster rate of genome rearrangement in nematodes than in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

19 March 2017

ACT: the Artemis Comparison Tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

7 April 2017

BamView: viewing mapped read alignment data in the context of the reference sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Genomics. Genome project standards in a new era of sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Functional analysis of putative operons in Brugia malayi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Genetics of mating and sex determination in the parasitic nematode Haemonchus contortus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

A new class of anthelmintics effective against drug-resistant nematodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Evolutionary dynamics of nematode operons: easy come, slow go.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Overview of gene structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Transposons in C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Transposable elements are enriched within or in close proximity to xenobiotic-metabolizing cytochrome P450 genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Understanding anthelmintic resistance: the need for genomics and genetics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Characterisation of Teladorsagia circumcincta microsatellites and their development as population genetic markers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

The use of Caenorhabditis elegans in parasitic nematode research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Drug resistance in veterinary helminths

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

The nature and prospects for gut membrane proteins as vaccine candidates for Haemonchus contortus and other ruminant trichostrongyloids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Caenorhabditis elegans operons: form and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Genetic variability following selection of Haemonchus contortus with anthelmintics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Intron-exon structures of eukaryotic model organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

Molecular genealogy of some nematode taxa as based on cytochrome c and globin amino acid sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

29 September 2017

C. elegans sequences that control trans-splicing and operon pre-mRNA processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

2 June 2018

Characterization of a tandemly repetitive DNA sequence from Haemonchus contortus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

2 June 2018

Ectopic expression of a Haemonchus contortus GATA transcription factor in Caenorhabditis elegans reveals conserved function in spite of extensive sequence divergence

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023216

21 January 2018

Haemonchus contortus SL2 trans-spliced RNA leader sequence

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023216

21 January 2018

Microsatellites of the parasitic nematode Haemonchus contortus: polymorphism and linkage with a direct repeat

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023216

21 January 2018

Generation of a widespread Drosophila inversion by a transposable element

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023216

21 January 2018

Flow cytometry for parasite nematode genome size measurement

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023216

21 January 2018

A transcriptomic analysis of the phylum Nematoda

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023216

21 January 2018

WebACT--an online companion for the Artemis Comparison Tool

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0023216

21 January 2018

Cloning of a putative inhibitory amino acid receptor subunit from the parasitic nematode Haemonchus contortus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3156134

27 November 2018

Vaccination against Haemonchus contortus: performance of native parasite gut membrane glycoproteins in Merino lambs grazing contaminated pasture

1 reference

https://pubmed.ncbi.nlm.nih.gov/21858033

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0023216

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2011PLoSO...623216L

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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