(Q28477065)

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Gene expression noise in spatial patterning: hunchback promoter structure affects noise amplitude and distribution in Drosophila segmentation

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Gene expression noise in spatial patterning: hunchback promoter structure affects noise amplitude and distribution in Drosophila segmentation (English)

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spatial pattern

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Luciano da Fontoura Costa

3

object named as

Luciano da Fontoura Costa

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Nina Golyandina

object named as

Nina Golyandina

5

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David M. Holloway

object named as

David M Holloway

1

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Bruno Augusto Nassif Travençolo

4

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Bruno A N Travençolo

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Francisco J P Lopes

2

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Konstantin Usevich

6

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Alexander V Spirov

7

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publication date

3 February 2011

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PLOS Computational Biology

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7

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2

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e1001069

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Creative Commons Attribution 4.0 International

3 February 2011

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April 2022 Public Data File from Crossref

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Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation

1 reference

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Stable, precise, and reproducible patterning of bicoid and hunchback molecules in the early Drosophila embryo

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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A gradient of bicoid protein in Drosophila embryos

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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27 November 2018

Identifiers

10.1371/JOURNAL.PCBI.1001069

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

DBLP publication ID

journals/ploscb/HollowayLCTGUS11

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DBLP Dataset 2021-01-02

28 January 2021

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

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