(Q28478154)

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Optimization of a low cost and broadly sensitive genotyping assay for HIV-1 drug resistance surveillance and monitoring in resource-limited settings

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scholarly article

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Optimization of a low cost and broadly sensitive genotyping assay for HIV-1 drug resistance surveillance and monitoring in resource-limited settings (English)

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1 reference

based on heuristic

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11

object named as

Isaac Zulu

author given names

Isaac

author last names

Zulu

1 reference

PubMed publication ID

19 October 2023

John N. Nkengasong

13

object named as

John Nkengasong

author given names

John

author last names

Nkengasong

1 reference

PubMed publication ID

19 October 2023

14

object named as

Chunfu Yang

author given names

Chunfu

author last names

Yang

1 reference

PubMed publication ID

19 October 2023

5

object named as

Karidia Diallo

author given names

Karidia

author last names

Diallo

1 reference

PubMed publication ID

19 October 2023

3

object named as

Joshua R DeVos

author given names

Joshua R

author last names

DeVos

1 reference

PubMed publication ID

19 October 2023

2

object named as

Nick Wagar

author given names

Nick

author last names

Wagar

1 reference

PubMed publication ID

19 October 2023

Nellie Wadonda-Kabondo

9

object named as

Nellie Wadonda-Kabondo

author given names

Nellie

author last names

Wadonda-Kabondo

1 reference

PubMed publication ID

19 October 2023

author name string

Zhiyong Zhou

1

author given names

Zhiyong

author last names

Zhou

1 reference

PubMed publication ID

19 October 2023

Erin Rottinghaus

4

author given names

Erin

author last names

Rottinghaus

1 reference

PubMed publication ID

19 October 2023

Duc B Nguyen

6

author given names

Duc B

author last names

Nguyen

1 reference

PubMed publication ID

19 October 2023

Orji Bassey

7

author given names

Orji

author last names

Bassey

1 reference

PubMed publication ID

19 October 2023

Richard Ugbena

8

author given names

Richard

author last names

Ugbena

1 reference

PubMed publication ID

19 October 2023

Michelle S McConnell

10

author given names

Michelle S

author last names

McConnell

1 reference

PubMed publication ID

19 October 2023

Benson Chilima

12

author given names

Benson

author last names

Chilima

1 reference

PubMed publication ID

19 October 2023

language of work or name

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publication date

2011

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6

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11

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e28184

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copyright license

Creative Commons CC0 License

23 November 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

Effectiveness of non-nucleoside reverse-transcriptase inhibitor-based antiretroviral therapy in women previously exposed to a single intrapartum dose of nevirapine: a multi-country, prospective cohort study

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19 March 2017

Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

19 March 2017

Minority HIV-1 drug resistance mutations are present in antiretroviral treatment-naïve populations and associate with reduced treatment efficacy

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

19 March 2017

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

19 March 2017

High failure rate of the ViroSeq HIV-1 genotyping system for drug resistance testing in Cameroon, a country with broad HIV-1 genetic diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Dried blood spots for HIV-1 drug resistance and viral load testing: A review of current knowledge and WHO efforts for global HIV drug resistance surveillance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Development and application of a broadly sensitive dried-blood-spot-based genotyping assay for global surveillance of HIV-1 drug resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Stability of dried blood spots for HIV-1 drug resistance analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Affordable in-house antiretroviral drug resistance assay with good performance in non-subtype B HIV-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an International AIDS Society-USA panel.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Rapid decline in the efficiency of HIV drug resistance genotyping from dried blood spots (DBS) and dried plasma spots (DPS) stored at 37 degrees C and high humidity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

New methods for the surveillance of HIV drug resistance in the resource poor world

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

HIV-1 drug resistance genotyping from dried blood spots stored for 1 year at 4 degrees C

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Epidemiology of antiretroviral drug resistance in drug-naïve persons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Evaluation of dried blood spots for human immunodeficiency virus type 1 drug resistance testing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

The requirement for surveillance of HIV drug resistance within antiretroviral rollout in the developing world

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

An automated genotyping system for analysis of HIV-1 and other microbial sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Sensitivity and specificity of the ViroSeq human immunodeficiency virus type 1 (HIV-1) genotyping system for detection of HIV-1 drug resistance mutations by use of an ABI PRISM 3100 genetic analyzer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Performance of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for sequence-based analysis of diverse human immunodeficiency virus type 1 strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Characterization of nevirapine resistance mutations in women with subtype A vs. D HIV-1 6-8 weeks after single-dose nevirapine (HIVNET 012).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Sources and magnitude of intralaboratory variability in a sequence-based genotypic assay for human immunodeficiency virus type 1 drug resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Performance characteristics of human immunodeficiency virus type 1 (HIV-1) genotyping systems in sequence-based analysis of subtypes other than HIV-1 subtype B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Time trends in primary HIV-1 drug resistance among recently infected persons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Origin of human immunodeficiency virus type 1 quasispecies emerging after antiretroviral treatment interruption in patients with therapeutic failure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Performance of Applied Biosystems ViroSeq HIV-1 Genotyping System for sequence-based analysis of non-subtype B human immunodeficiency virus type 1 from Uganda

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Selection and fading of resistance mutations in women and infants receiving nevirapine to prevent HIV-1 vertical transmission (HIVNET 012).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

High degree of interlaboratory reproducibility of human immunodeficiency virus type 1 protease and reverse transcriptase sequencing of plasma samples from heavily treated patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

Worldwide evaluation of DNA sequencing approaches for identification of drug resistance mutations in the human immunodeficiency virus type 1 reverse transcriptase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

29 September 2017

HIV-1 isolates are rapidly evolving quasispecies: evidence for viral mixtures and preferred nucleotide substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

2 June 2018

The WHO public-health approach to antiretroviral treatment against HIV in resource-limited settings.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028184

21 January 2018

Evaluation of two human immunodeficiency virus-1 genotyping systems: ViroSeq 2.0 and an in-house method

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028184

21 January 2018

Performance of two commercially available sequence-based HIV-1 genotyping systems for the detection of drug resistance against HIV type 1 group M subtypes.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028184

21 January 2018

Evaluation of two commercial kits for the detection of genotypic drug resistance on a panel of HIV type 1 subtypes A through J.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028184

21 January 2018

Antiretroviral drug resistance testing in adults infected with human immunodeficiency virus type 1: 2003 recommendations of an International AIDS Society-USA Panel

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028184

21 January 2018

Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028184

21 January 2018

Subtype variability, virological response and drug resistance assessed on dried blood spots collected from HIV patients on antiretroviral therapy in Angola

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028184

21 January 2018

Genotypic testing for HIV-1 drug resistance using dried blood samples

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028184

21 January 2018

Evaluation of an in-house genotyping resistance test for HIV-1 drug resistance interpretation and genotyping.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0028184

21 January 2018

The World Health Organization's global strategy for prevention and assessment of HIV drug resistance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

27 November 2018

Threshold survey evaluating transmitted HIV drug resistance among public antenatal clinic clients in Addis Ababa, Ethiopia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

27 November 2018

World Health Organization/HIVResNet Drug Resistance Laboratory Strategy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

27 November 2018

World Health Organization surveys to monitor HIV drug resistance prevention and associated factors in sentinel antiretroviral treatment sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223235

27 November 2018

Evaluation of dried blood spot specimens for HIV-1 drug-resistance testing using the Trugene HIV-1 genotyping assay

1 reference

https://pubmed.ncbi.nlm.nih.gov/22132237

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of HIV-1 variants by cloning DNA generated with the ViroSeq HIV-1 Genotyping System

1 reference

https://pubmed.ncbi.nlm.nih.gov/22132237

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High concordance between HIV-1 drug resistance genotypes generated from plasma and dried blood spots in antiretroviral-experienced patients

1 reference

https://pubmed.ncbi.nlm.nih.gov/22132237

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0028184

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2011PLoSO...628184Z

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OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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