(Q28478193)

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A general model for binary cell fate decision gene circuits with degeneracy: indeterminacy and switch behavior in the absence of cooperativity

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A general model for binary cell fate decision gene circuits with degeneracy: indeterminacy and switch behavior in the absence of cooperativity (English)

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object named as

David A Winkler

3

author given names

David A

author last names

Winkler

1 reference

PubMed publication ID

19 October 2023

author name string

Mircea Andrecut

1

author given names

Mircea

author last names

Andrecut

1 reference

PubMed publication ID

19 October 2023

Julianne D Halley

2

author given names

Julianne D

author last names

Halley

1 reference

PubMed publication ID

19 October 2023

Sui Huang

4

author given names

Sui

author last names

Huang

1 reference

PubMed publication ID

19 October 2023

language of work or name

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publication date

2011

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6

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5

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e19358

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copyright license

Creative Commons Attribution 4.0 International

19 May 2011

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April 2022 Public Data File from Crossref

copyright status

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Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst

1 reference

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19 March 2017

Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

19 March 2017

The functional landscape of mouse gene expression

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19 March 2017

A gene atlas of the mouse and human protein-encoding transcriptomes

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19 March 2017

Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation

1 reference

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19 March 2017

Construction of a genetic toggle switch in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

19 March 2017

Negative cross-talk between hematopoietic regulators: GATA proteins repress PU.1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

19 March 2017

Direct interaction of hematopoietic transcription factors PU.1 and GATA-1: functional antagonism in erythroid cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

19 March 2017

PU.1 (Spi-1) autoregulates its expression in myeloid cells

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

19 March 2017

The jun proto-oncogene is positively autoregulated by its product, Jun/AP-1

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

19 March 2017

Interaction between Oct3/4 and Cdx2 determines trophectoderm differentiation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

19 March 2017

The ground state of embryonic stem cell self-renewal

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

7 April 2017

Understanding gene circuits at cell-fate branch points for rational cell reprogramming

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Cell lineage determination in state space: a systems view brings flexibility to dogmatic canonical rules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript.

1 reference

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29 September 2017

Forcing cells to change lineages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Systems biology of stem cell fate and cellular reprogramming

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Cross-regulation of the Nanog and Cdx2 promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Stem cell states, fates, and the rules of attraction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Stem cell decision making and critical-like exploratory networks.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Reprogramming cell fates: reconciling rarity with robustness

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Heterogeneity of embryonic and adult stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

A computational model for understanding stem cell, trophectoderm and endoderm lineage determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Wnt/Notch signalling and information processing during development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Bifurcation dynamics in lineage-commitment in bipotent progenitor cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Stem cells and lineage development in the mammalian blastocyst

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Transcriptional dynamics of the embryonic stem cell switch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

PU.1 inhibits the erythroid program by binding to GATA-1 on DNA and creating a repressive chromatin structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

GATA-1: friends, brothers, and coworkers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

PU.1 and pRB Interact and Cooperate To Repress GATA-1 and Block Erythroid Differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Teleonomic mechanisms in cellular metabolism, growth, and differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Downregulation of c-Jun expression by transcription factor C/EBPalpha is critical for granulocytic lineage commitment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Granulocyte inducer C/EBPalpha inactivates the myeloid master regulator PU.1: possible role in lineage commitment decisions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Inhibition of CBP-mediated protein acetylation by the Ets family oncoprotein PU.1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

PU.1 inhibits GATA-1 function and erythroid differentiation by blocking GATA-1 DNA binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

GATA-1 interacts with the myeloid PU.1 transcription factor and represses PU.1-dependent transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Autoregulation of the human C/EBP alpha gene by stimulation of upstream stimulatory factor binding

1 reference

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29 September 2017

Michaelis-Menten mechanism reconsidered: implications of fractal kinetics

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

29 September 2017

Monte Carlo simulation of a simple gene network yields new evolutionary insights

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098230

2 June 2018

High-dimensional switches and the modelling of cellular differentiation.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019358

21 January 2018

Towards an understanding of lineage specification in hematopoietic stem cells: a mathematical model for the interaction of transcription factors GATA-1 and PU.1.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019358

21 January 2018

Molecular analysis of the interaction between the hematopoietic master transcription factors GATA-1 and PU.1.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019358

21 January 2018

A bistable genetic switch which does not require high co-operativity at the promoter: a two-timescale model for the PU.1-GATA-1 interaction.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019358

21 January 2018

Genetic toggle switch without cooperative binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/21625586

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Another horse in the meta-stable state of pluripotency

1 reference

https://pubmed.ncbi.nlm.nih.gov/21625586

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stochastic patterning in the mouse pre-implantation embryo

1 reference

https://pubmed.ncbi.nlm.nih.gov/21625586

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0019358

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2011PLoSO...619358A

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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