(Q28484378)

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Residual expression of reprogramming factors affects the transcriptional program and epigenetic signatures of induced pluripotent stem cells

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Residual expression of reprogramming factors affects the transcriptional program and epigenetic signatures of induced pluripotent stem cells (English)

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Darrell N Kotton

object named as

Darrell N Kotton

9

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Gustavo Mostoslavsky

object named as

Gustavo Mostoslavsky

10

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object named as

Avrum Spira

7

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author name string

Cesar A Sommer

1

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Constantina Christodoulou

2

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Andreia Gianotti-Sommer

3

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Steven S Shen

4

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Badi Sri Sailaja

5

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Hadas Hezroni

6

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Eran Meshorer

8

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language of work or name

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publication date

2012

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7

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12

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e51711

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copyright license

Creative Commons Attribution 4.0 International

14 December 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

19 March 2017

Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

19 March 2017

Disease-specific induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

19 March 2017

Induced pluripotent stem cell lines derived from human somatic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

19 March 2017

Generation of germline-competent induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

19 March 2017

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

19 March 2017

Myc represses transcription through recruitment of DNA methyltransferase corepressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

19 March 2017

Parkinson's disease patient-derived induced pluripotent stem cells free of viral reprogramming factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

19 March 2017

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

7 April 2017

Somatic coding mutations in human induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

7 April 2017

Induced pluripotent stem cells generated from patients with ALS can be differentiated into motor neurons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

7 April 2017

Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

7 April 2017

Cell type of origin influences the molecular and functional properties of mouse induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

7 April 2017

Ascorbic acid prevents loss of Dlk1-Dio3 imprinting and facilitates generation of all-iPS cell mice from terminally differentiated B cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Reprogramming factor stoichiometry influences the epigenetic state and biological properties of induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

H3K9 histone acetylation predicts pluripotency and reprogramming capacity of ES cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Pluripotency-related, valproic acid (VPA)-induced genome-wide histone H3 lysine 9 (H3K9) acetylation patterns in embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Induced pluripotent stem cells for modelling human diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Pluripotency factors in embryonic stem cells regulate differentiation into germ layers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Constructing and deconstructing stem cell models of neurological disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Harnessing the potential of induced pluripotent stem cells for regenerative medicine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Mouse ES and iPS cells can form similar definitive endoderm despite differences in imprinted genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Copy number variation and selection during reprogramming to pluripotency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Induced pluripotency: history, mechanisms, and applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Experimental approaches for the generation of induced pluripotent stem cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Promotion of direct reprogramming by transformation-deficient Myc.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Reprogramming of human peripheral blood cells to induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Activation of the imprinted Dlk1-Dio3 region correlates with pluripotency levels of mouse stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

c-MYC independent nuclear reprogramming favors cardiogenic potential of induced pluripotent stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Excision of reprogramming transgenes improves the differentiation potential of iPS cells generated with a single excisable vector

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Role of the murine reprogramming factors in the induction of pluripotency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Induced pluripotent stem cell generation using a single lentiviral stem cell cassette

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Retroviral vector silencing during iPS cell induction: an epigenetic beacon that signals distinct pluripotent states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Defining molecular cornerstones during fibroblast to iPS cell reprogramming in mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Why myc? An unexpected ingredient in the stem cell cocktail

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Kruppel-like factor 4 is acetylated by p300 and regulates gene transcription via modulation of histone acetylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

BMP-4 is required for hepatic specification of mouse embryonic stem cell-derived definitive endoderm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Myc influences global chromatin structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Transcriptional activation by the Myc oncoprotein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Transgenesis by lentiviral vectors: lack of gene silencing in mammalian embryonic stem cells and preimplantation embryos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

29 September 2017

Generation of transgene-free lung disease-specific human induced pluripotent stem cells using a single excisable lentiviral stem cell cassette.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

2 June 2018

Global hypomethylation of the genome in XX embryonic stem cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3522693

2 June 2018

Lab-specific gene expression signatures in pluripotent stem cells

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051711

21 January 2018

c-Myc is dispensable for direct reprogramming of mouse fibroblasts.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051711

21 January 2018

Epigenetic modifications in an imprinting cluster are controlled by a hierarchy of DMRs suggesting long-range chromatin interactions.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051711

21 January 2018

Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0051711

21 January 2018

Crucial role of c-Myc in the generation of induced pluripotent stem cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/23272148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nanog and Oct4 associate with unique transcriptional repression complexes in embryonic stem cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/23272148

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0051711

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2012PLoSO...751711S

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release_skd5x6x6ujcolcidpv66a57qb4

1 reference

https://api.fatcat.wiki/v0/release/skd5x6x6ujcolcidpv66a57qb4

24 November 2022

based on heuristic

mapped directly with Wikidata item

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