(Q28489101)

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Transcriptomic analysis of Streptomyces coelicolor differentiation in solid sporulating cultures: first compartmentalized and second multinucleated mycelia have different and distinctive transcriptomes

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scholarly article

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Transcriptomic analysis of Streptomyces coelicolor differentiation in solid sporulating cultures: first compartmentalized and second multinucleated mycelia have different and distinctive transcriptomes (English)

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Streptomyces coelicolor

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Streptomyces albidoflavus

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Calcium-dependent antibiotic

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1 reference

María T López-García

object named as

María T López-García

3

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Ángel Manteca Fernández

object named as

Angel Manteca

7

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author name string

Paula Yagüe

1

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Antonio Rodríguez-García

2

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Juan F Martín

4

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Beatriz Rioseras

5

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Jesús Sánchez

6

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language of work or name

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publication date

2013

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full work available at URL

https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0060665&type=printable

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.1371/journal.pone.0060665?email=unpaywall_01@example.com

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8

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3

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e60665

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copyright license

Creative Commons Attribution 4.0 International

28 March 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

object named as

limma

2 references

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/3610822

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

online access status

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.1371/journal.pone.0060665?email=unpaywall_01@example.com

access restriction status

1 reference

based on heuristic

inferred from online access status

Biosynthesis of the earthy odorant geosmin by a bifunctional Streptomyces coelicolor enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

19 March 2017

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

19 March 2017

From dormant to germinating spores of Streptomyces coelicolor A3(2): new perspectives from the crp null mutant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

19 March 2017

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

19 March 2017

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

7 April 2017

RNA-Seq and RNA immunoprecipitation analyses of the transcriptome of Streptomyces coelicolor identify substrates for RNase III

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Quantitative proteomics analysis of Streptomyces coelicolor development demonstrates that onset of secondary metabolism coincides with hypha differentiation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

The dynamic architecture of the metabolic switch in Streptomyces coelicolor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Development and application of versatile high density microarrays for genome-wide analysis of Streptomyces coelicolor: characterization of the HspR regulon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Streptomyces morphogenetics: dissecting differentiation in a filamentous bacterium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Uncovering genes with divergent mRNA-protein dynamics in Streptomyces coelicolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Mycelium differentiation and antibiotic production in submerged cultures of Streptomyces coelicolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

New pleiotropic effects of eliminating a rare tRNA from Streptomyces coelicolor, revealed by combined proteomic and transcriptomic analysis of liquid cultures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Regulation of Streptomyces development: reach for the sky!

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Cytological and biochemical evidence for an early cell dismantling event in surface cultures of Streptomyces antibioticus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Fine Structure, Physiology and Biochemistry of Arthrospore Germination in Streptomyces antibioticus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Nutritionally defined conditions for germination of Streptomyces viridochromogenes spores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

29 September 2017

Streptomyces development in colonies and soils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

2 June 2018

Properties of the germination inhibitor of Streptomyces viridochromogenes spores.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

2 June 2018

Sporulation of Streptomyces antibioticus ETHZ 7451 in submerged culture.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

2 June 2018

Quantitative proteome analysis of Streptomyces coelicolor Nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060665

21 January 2018

NepA is a structural cell wall protein involved in maintenance of spore dormancy in Streptomyces coelicolor.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060665

21 January 2018

Loss of the controlled localization of growth stage-specific cell-wall synthesis pleiotropically affects developmental gene expression in an ssgA mutant of Streptomyces coelicolor.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060665

21 January 2018

Deletion of a regulatory gene within the cpk gene cluster reveals novel antibacterial activity in Streptomyces coelicolor A3(2).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060665

21 January 2018

The complex whiJ locus mediates environmentally sensitive repression of development of Streptomyces coelicolor A3(2).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060665

21 January 2018

Systems insight into the spore germination of Streptomyces coelicolor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

27 November 2018

Streptomyces coelicolor A3(2) produces a new yellow pigment associated with the polyketide synthase Cpk.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

27 November 2018

SarA influences the sporulation and secondary metabolism in Streptomyces coelicolor M145.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610822

27 November 2018

RNA and ribosomal protein patterns during aerial spore germination in Streptomyces granaticolor

1 reference

https://pubmed.ncbi.nlm.nih.gov/23555999

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pattern of protein degradation during germination of Streptomyces antibioticus spores

1 reference

https://pubmed.ncbi.nlm.nih.gov/23555999

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and biosynthesis of the unusual polyketide alkaloid coelimycin P1, a metabolic product of the cpk gene cluster of Streptomyces coelicolor M145

1 reference

12 April 2024

https://opencitations.net/index/api/v1/references/10.1371/JOURNAL.PONE.0060665

Identifiers

10.1371/JOURNAL.PONE.0060665

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2013PLoSO...860665Y

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PMC publication ID

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PubMed publication ID

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ResearchGate publication ID

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