(Q28540007)

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Global analysis of lysine acetylation suggests the involvement of protein acetylation in diverse biological processes in rice (Oryza sativa)

scientific article (publication date: 2014)

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scholarly article

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Global analysis of lysine acetylation suggests the involvement of protein acetylation in diverse biological processes in rice (Oryza sativa) (English)

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Mariola J. Ferraro

object named as

Mariola J Edelmann

2

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7

object named as

Bindu Nanduri

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author name string

Babi Ramesh Reddy Nallamilli

1

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Xiaoxian Zhong

3

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Feng Tan

4

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Hana Mujahid

5

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Jian Zhang

6

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Zhaohua Peng

8

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language of work or name

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publication date

2014

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9

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2

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e89283

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copyright license

Creative Commons Attribution 4.0 International

20 February 2014

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April 2022 Public Data File from Crossref

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CPLA 1.0: an integrated database of protein lysine acetylation

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19 March 2017

Regulation of cellular metabolism by protein lysine acetylation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

19 March 2017

Lysine acetylation targets protein complexes and co-regulates major cellular functions

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

19 March 2017

Distinctive core histone post-translational modification patterns in Arabidopsis thaliana

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19 March 2017

AgBase: a functional genomics resource for agriculture

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19 March 2017

Substrate and functional diversity of lysine acetylation revealed by a proteomics survey

1 reference

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19 March 2017

ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

19 March 2017

Mechanisms of P/CAF auto-acetylation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

19 March 2017

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

19 March 2017

A generic protein purification method for protein complex characterization and proteome exploration

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

19 March 2017

Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

7 April 2017

Proteome-Wide Mapping of the Drosophila Acetylome Demonstrates a High Degree of Conservation of Lysine Acetylation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

9 May 2017

Nuclear proteome response to cell wall removal in rice (Oryza sativa)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Modulation of protein phosphorylation, N-glycosylation and Lys-acetylation in grape (Vitis vinifera) mesocarp and exocarp owing to Lobesia botrana infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Lysine acetylation is widespread on proteins of diverse function and localization in the protozoan parasite Toxoplasma gondii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

SUMO and SUMOylation in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Functional mimicry of the acetylated C-terminal tail of p53 by a SUMO-1 acetylated domain, SAD

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Histone acetyltransferase AtGCN5/HAG1 is a versatile regulator of developmental and inducible gene expression in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Workflow for large scale detection and validation of peptide modifications by RPLC-LTQ-Orbitrap: application to the Arabidopsis thaliana leaf proteome and an online modified peptide library

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Rice histone deacetylase genes display specific expression patterns and developmental functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

GCN5-mediated transcriptional control of the metabolic coactivator PGC-1beta through lysine acetylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

The diversity of lysine-acetylated proteins in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Comparative analysis of proteome differential regulation during cell dedifferentiation in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Histone deacetylase genes in Arabidopsis development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Removal of high-abundance proteins for nuclear subproteome studies in rice (Oryza sativa) endosperm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

The age of crosstalk: phosphorylation, ubiquitination, and beyond

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Roles of dynamic and reversible histone acetylation in plant development and polyploidy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

The TIGR Rice Genome Annotation Resource: improvements and new features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Improving the accuracy of protein secondary structure prediction using structural alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Structural analysis of a highly acetylated protein using a curved-field reflectron mass spectrometer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Regulatory cross-talk between lysine acetylation and ubiquitination: role in the control of protein stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Inhibition of p53 degradation by Mdm2 acetylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

The Cf-9 disease resistance protein is present in an approximately 420-kilodalton heteromultimeric membrane-associated complex at one molecule per complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

Persistent interactions of core histone tails with nucleosomal DNA following acetylation and transcription factor binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

29 September 2017

The Three Musketeers of Autophagy: phosphorylation, ubiquitylation and acetylation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

3 June 2018

OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

3 June 2018

Nuclear translocation of glyceraldehyde-3-phosphate dehydrogenase is regulated by acetylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

3 June 2018

Calorie restriction alters mitochondrial protein acetylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

3 June 2018

Probability-based validation of protein identifications using a modified SEQUEST algorithm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930695

3 June 2018

Integration of cytological features with molecular and epigenetic properties of rice chromosome 4.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0089283

21 January 2018

Proteins of diverse function and subcellular location are lysine acetylated in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0089283

21 January 2018

Lysine acetylation is a widespread protein modification for diverse proteins in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0089283

21 January 2018

Comparison of CID versus ETD based MS/MS fragmentation for the analysis of protein ubiquitination.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0089283

21 January 2018

Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0089283

21 January 2018

An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0089283

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0089283

21 January 2018

Comprehensive profiling of protein lysine acetylation in Escherichia coli

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21 January 2018

Interaction between N-terminal domain of H4 and DNA is regulated by the acetylation degree

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/24586658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tandem affinity purification tagging of fatty acid biosynthetic enzymes in Synechocystis sp. PCC6803 and Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/24586658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hd3a and RFT1 are essential for flowering in rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/24586658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential histone modification and protein expression associated with cell wall removal and regeneration in rice (Oryza sativa)

1 reference

https://pubmed.ncbi.nlm.nih.gov/24586658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP)

1 reference

https://pubmed.ncbi.nlm.nih.gov/24586658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/24586658

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0089283

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2014PLoSO...989283N

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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