(Q28542761)

Paul D Adams

4

0 references

Christopher J Petzold

Christopher J Petzold

7

0 references

Aindrila Mukhopadhyay

6

Aindrila Mukhopadhyay

0 references

Jay Keasling

5

Jay D Keasling

0 references

Daniel S Weaver

3

Daniel Weaver

0 references

author name string

Amit Ghosh

1

0 references

Jerome Nilmeier

PLOS Computational Biology

2

0 references

language of work or name

English

0 references

publication date

September 2014

0 references

published in

0 references

volume

10

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issue

9

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page(s)

e1003827

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copyright license

Creative Commons Attribution 4.0 International

start time

4 September 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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The complete genome sequence of Escherichia coli K-12

19 March 2017

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Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

19 March 2017

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Flux analysis and metabolomics for systematic metabolic engineering of microorganisms

7 April 2017

1 reference

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Progress toward single cell metabolomics

29 September 2017

1 reference

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OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities

29 September 2017

1 reference

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Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling

29 September 2017

1 reference

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Research advances and challenges in the microbiology of enhanced biological phosphorus removal--a critical review.

29 September 2017

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Quantitative tracking of isotope flows in proteomes of microbial communities

29 September 2017

1 reference

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UNiquant, a program for quantitative proteomics analysis using stable isotope labeling

29 September 2017

1 reference

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Metabolic flux analysis of the mixotrophic metabolisms in the green sulfur bacterium Chlorobaculum tepidum

29 September 2017

1 reference

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Value of using multiple proteases for large-scale mass spectrometry-based proteomics

29 September 2017

1 reference

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Systems biology: Functional analysis of natural microbial consortia using community proteomics

29 September 2017

1 reference

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Advances in analysis of microbial metabolic fluxes via (13)C isotopic labeling

29 September 2017

1 reference

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Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism

29 September 2017

1 reference

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Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

29 September 2017

1 reference

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The microbial engines that drive Earth's biogeochemical cycles.

29 September 2017

1 reference

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Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Advances in enhanced biological phosphorus removal: from micro to macro scale

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Multiple high-throughput analyses monitor the response of E. coli to perturbations

29 September 2017

1 reference

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Metabolic modeling of a mutualistic microbial community.

29 September 2017

1 reference

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Metabolic networks in motion: 13C-based flux analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Advances in proteomics data analysis and display using an accurate mass and time tag approach.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Metaproteomics: studying functional gene expression in microbial ecosystems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Metagenomics: DNA sequencing of environmental samples.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliab

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the Escherichia coli spectrum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

New tools for mass isotopomer data evaluation in (13)C flux analysis: mass isotope correction, data consistency checking, and precursor relationships.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Dynamic flux balance analysis of diauxic growth in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Heavy metal mining using microbes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

13C metabolic flux analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Isotopomer analysis using GC-MS.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Pathway of acetate assimilation in autotrophic and heterotrophic methanococci

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Subpopulation-specific metabolic pathway usage in mixed cultures as revealed by reporter protein-based 13C analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Metabolic flux elucidation for large-scale models using 13C labeled isotopes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Evaluation of carbon flux and substrate selection through alternate pathways involving the citric acid cycle of the heart by 13C NMR spectroscopy.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

Metabolic Flux Balancing: Basic Concepts, Scientific and Practical Use

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Multidimensional optimality of microbial metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Metabolic flux analysis and visualization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Isotopomer distributions in amino acids from a highly expressed protein as a proxy for those from total protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Determination of metabolic flux changes during fed-batch cultivation from measurements of intracellular amino acids by LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Improved computational performance of MFA using elementary metabolite units and flux coupling

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Information Theory and Statistical Mechanics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Monte Carlo sampling can be used to determine the size and shape of the steady-state flux space

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

Modeling soil metabolic processes using isotopologue pairs of position-specific 13C-labeled glucose and pyruvate

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003827

13C-metabolic flux analysis for batch culture of Escherichia coli and its Pyk and Pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4154649

A universal framework for 13C metabolic flux analysis

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25188426

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1003827

0 references

DBLP publication ID

journals/ploscb/GhoshNWAKMPM14

1 reference