(Q28542984)

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Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover

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scholarly article

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Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover (English)

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Saccharomyces cerevisiae

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1 reference

based on heuristic

inferred from title

30

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Blake Alexander Simmons

object named as

Blake A Simmons

22

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Michael S Westphall

24

object named as

Michael S Westphall

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author name string

Lucas S Parreiras

1

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Rebecca J Breuer

2

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Ragothaman Avanasi Narasimhan

3

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Alan J Higbee

4

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Alex La Reau

5

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Mary Tremaine

6

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Li Qin

7

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Laura B Willis

8

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Benjamin D Bice

9

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Brandi L Bonfert

10

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Rebeca C Pinhancos

11

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Allison J Balloon

12

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Nirmal Uppugundla

13

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Tongjun Liu

14

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Chenlin Li

15

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Deepti Tanjore

16

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Irene M Ong

17

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Haibo Li

18

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Edward L Pohlmann

19

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Jose Serate

20

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Sydnor T Withers

21

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David B Hodge

23

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Joshua J Coon

25

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Bruce E Dale

26

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Venkatesh Balan

27

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David H Keating

28

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Yaoping Zhang

29

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Audrey P Gasch

31

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Trey K Sato

32

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language of work or name

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publication date

2014

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9

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9

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e107499

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copyright license

Creative Commons CC0 License

15 September 2014

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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Death by a thousand cuts: the challenges and diverse landscape of lignocellulosic hydrolysate inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

19 March 2017

Genome dynamics during experimental evolution

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19 March 2017

Exploiting natural variation in Saccharomyces cerevisiae to identify genes for increased ethanol resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

19 March 2017

Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

19 March 2017

Functional expression of a bacterial xylose isomerase in Saccharomyces cerevisiae

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19 March 2017

Population genomics of domestic and wild yeasts

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19 March 2017

What is (and is not) vital to advancing cellulosic ethanol

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

19 March 2017

Putative xylose and arabinose reductases in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

19 March 2017

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

19 March 2017

A new efficient gene disruption cassette for repeated use in budding yeast

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

19 March 2017

Xylose-metabolizing Saccharomyces cerevisiae strains overexpressing the TKL1 and TAL1 genes encoding the pentose phosphate pathway enzymes transketolase and transaldolase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

19 March 2017

Getting started with yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

7 April 2017

Stepwise metabolic adaption from pure metabolization to balanced anaerobic growth on xylose explored for recombinant Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Formation of degradation compounds from lignocellulosic biomass in the biorefinery: sugar reaction mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Construction of fast xylose-fermenting yeast based on industrial ethanol-producing diploid Saccharomyces cerevisiae by rational design and adaptive evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Rewiring yeast sugar transporter preference through modifying a conserved protein motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose in hydrolysates of alkaline hydrogen peroxide-pretreated biomass

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Scale-up and evaluation of high solid ionic liquid pretreatment and enzymatic hydrolysis of switchgrass

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Phenotypic selection of a wild Saccharomyces cerevisiae strain for simultaneous saccharification and co-fermentation of AFEX™ pretreated corn stover.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Advances and developments in strategies to improve strains of Saccharomyces cerevisiae and processes to obtain the lignocellulosic ethanol--a review.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Complex physiology and compound stress responses during fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Scale-up and integration of alkaline hydrogen peroxide pretreatment, enzymatic hydrolysis, and ethanolic fermentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Metabolome remodeling during the acidogenic-solventogenic transition in Clostridium acetobutylicum

1 reference

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29 September 2017

Biomass deconstruction to sugars

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Stress-related challenges in pentose fermentation to ethanol by the yeast Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Bioconversion of lignocellulose-derived sugars to ethanol by engineered Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Comparing the fermentation performance of Escherichia coli KO11, Saccharomyces cerevisiae 424A(LNH-ST) and Zymomonas mobilis AX101 for cellulosic ethanol production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Comparison of heterologous xylose transporters in recombinant Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Lignocellulosic biomass pretreatment using AFEX.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Biofuels and the conundrum of sustainability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Development of efficient xylose fermentation in Saccharomyces cerevisiae: xylose isomerase as a key component.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Towards industrial pentose-fermenting yeast strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Transposon mutagenesis to improve the growth of recombinant Saccharomyces cerevisiae on D-xylose

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Genomic adaptation of ethanologenic yeast to biomass conversion inhibitors

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Investigation of limiting metabolic steps in the utilization of xylose by recombinant Saccharomyces cerevisiae using metabolic engineering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Endogenous xylose pathway in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Metabolic engineering for improved fermentation of pentoses by yeasts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Deletion of the GRE3 aldose reductase gene and its influence on xylose metabolism in recombinant strains of Saccharomyces cerevisiae expressing the xylA and XKS1 genes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Yeast vectors for integration at the HO locus

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Linearization of the Bradford protein assay increases its sensitivity: theoretical and experimental studies

1 reference

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29 September 2017

Purification and partial characterization of an aldo-keto reductase from Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

29 September 2017

Genealogy of principal strains of the yeast genetic stock center

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29 September 2017

Development of a D-xylose fermenting and inhibitor tolerant industrial Saccharomyces cerevisiae strain with high performance in lignocellulose hydrolysates using metabolic and evolutionary engineering.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

3 June 2018

Directed evolution of xylose isomerase for improved xylose catabolism and fermentation in the yeast Saccharomyces cerevisiae

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

3 June 2018

Structural characterization of alkaline hydrogen peroxide pretreated grasses exhibiting diverse lignin phenotypes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

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Evolutionary engineering strategies to enhance tolerance of xylose utilizing recombinant yeast to inhibitors derived from spruce biomass

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

3 June 2018

Improved xylose and arabinose utilization by an industrial recombinant Saccharomyces cerevisiae strain using evolutionary engineering

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4164640

3 June 2018

Cell-wall carbohydrates and their modification as a resource for biofuels

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

A genetic overhaul of Saccharomyces cerevisiae 424A(LNH-ST) to improve xylose fermentation.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Deleting the para-nitrophenyl phosphatase (pNPPase), PHO13, in recombinant Saccharomyces cerevisiae improves growth and ethanol production on D-xylose

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Multifaceted characterization of cell wall decomposition products formed during ammonia fiber expansion (AFEX) and dilute acid based pretreatments.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Ultrahigh performance liquid chromatography-tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Hypervariable noncoding sequences in Saccharomyces cerevisiae

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Minimal metabolic engineering of Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: a proof of principle

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Metabolic engineering of a xylose-isomerase-expressing Saccharomyces cerevisiae strain for rapid anaerobic xylose fermentation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0107499

21 January 2018

Gene expression cross-profiling in genetically modified industrial Saccharomyces cerevisiae strains during high-temperature ethanol production from xylose

1 reference

https://pubmed.ncbi.nlm.nih.gov/25222864

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhibition of d-xylose isomerase by pentitols and d-lyxose

1 reference

https://pubmed.ncbi.nlm.nih.gov/25222864

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0107499

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2014PLoSO...9j7499P

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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