(Q28546917)

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Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus Protoparmelia (Lecanorales, Ascomycota)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25932996%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus Protoparmelia (Lecanorales, Ascomycota) (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25932996%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

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cosmopolitan taxon

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based on heuristic

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7 March 2020

Francesco Dal Grande

2

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7 March 2020

Pradeep Kumar Divakar

3

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7 March 2020

Helge Thorsten Lumbsch

11

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7 March 2020

Katarzyna Szczepańska

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Katarzyna Szczepanska

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7 March 2020

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André Aptroot

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Ana Crespo

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7 March 2020

Steven D. Leavitt

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Steven D Leavitt

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7 March 2020

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Imke Schmitt

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7 March 2020

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Jürgen Otte

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7 March 2020

Víctor J Rico

8

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7 March 2020

Marcela Eugenia da Silva Cáceres

10

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7 March 2020

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1 May 2015

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7 March 2020

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Europe PubMed Central

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7 March 2020

10

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7 March 2020

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7 March 2020

e0124625

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Europe PubMed Central

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7 March 2020

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Creative Commons Attribution 4.0 International

1 May 2015

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April 2022 Public Data File from Crossref

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

1 reference

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19 March 2017

Pleistocene speciation in North American lichenized fungi and the impact of alternative species circumscriptions and rates of molecular evolution on divergence estimates

1 reference

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19 March 2017

Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets

1 reference

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19 March 2017

Using phylogenetic and coalescent methods to understand the species diversity in the Cladia aggregata complex (Ascomycota, Lecanorales)

1 reference

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19 March 2017

The performance of the Congruence Among Distance Matrices (CADM) test in phylogenetic analysis

1 reference

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19 March 2017

BEAST: Bayesian evolutionary analysis by sampling trees

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19 March 2017

Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

19 March 2017

MAFFT version 5: improvement in accuracy of multiple sequence alignment

1 reference

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19 March 2017

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

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19 March 2017

MRBAYES: Bayesian inference of phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

19 March 2017

Cryptic species as a window on diversity and conservation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

6 April 2017

jModelTest 2: more models, new heuristics and parallel computing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

7 April 2017

Sequence-based species delimitation for the DNA taxonomy of undescribed insects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

7 April 2017

ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

7 April 2017

Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species

1 reference

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7 April 2017

How do you solve a problem like Letharia? A new look at cryptic species in lichen-forming fungi using Bayesian clustering and SNPs from multilocus sequence data

1 reference

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9 May 2017

Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi

1 reference

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29 September 2017

Unguided species delimitation using DNA sequence data from multiple Loci

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Out of the deep: cryptic speciation in a Neotropical gecko (Squamata, Phyllodactylidae) revealed by species delimitation methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

A single macrolichen constitutes hundreds of unrecognized species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

The sister-group relationships of the largest family of lichenized fungi, Parmeliaceae (Lecanorales, Ascomycota).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Hidden diversity in the Andes: comparison of species delimitation methods in montane marsupials.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

How to fail at species delimitation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Multilocus species delimitation in a complex of morphologically conserved trapdoor spiders (mygalomorphae, antrodiaetidae, aliatypus).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Multilocus phylogeny and Bayesian estimates of species boundaries reveal hidden evolutionary relationships and cryptic diversity in Southeast Asian monitor lizards

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29 September 2017

Species delimitation with ABC and other coalescent-based methods: a test of accuracy with simulations and an empirical example with lizards of the Liolaemus darwinii complex (Squamata: Liolaemidae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Cryptic species in lichen-forming fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Species delimitation and cryptic diversity in the moss genus Scleropodium (Brachytheciaceae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Do lichens domesticate photobionts like farmers domesticate crops? Evidence from a previously unrecognized lineage of filamentous cyanobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Species delimitation and evolution in morphologically and chemically diverse communities of the lichen-forming genus Xanthoparmelia (Parmeliaceae, Ascomycota) in western North America

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

SpedeSTEM: a rapid and accurate method for species delimitation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

A phylogenetic analysis of the boreal lichen Mycoblastus sanguinarius (Mycoblastaceae, lichenized Ascomycota) reveals cryptic clades correlated with fatty acid profiles

1 reference

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29 September 2017

New primers for promising single-copy genes in fungal phylogenetics and systematics.

1 reference

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29 September 2017

Pronounced genetic diversity in tropical epiphyllous lichen fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Accelerated evolutionary rates in tropical and oceanic parmelioid lichens (Ascomycota).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

The sister group relation of parmeliaceae (Lecanorales, Ascomycota).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Major fungal lineages are derived from lichen symbiotic ancestors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

The origin of red algae: implications for plastid evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

29 September 2017

Phylogenetic and coalescent strategies of species delimitation in snubnose darters (Percidae: Etheostoma).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

3 June 2018

Phylogeny of bipolar Cladonia arbuscula and Cladonia mitis (Lecanorales, Euascomycetes).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4416777

3 June 2018

Photobiont association and genetic diversity of the optionally lichenized fungus Schizoxylon albescens

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Contribution of cryptogamic covers to the global cycles of carbon and nitrogen

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Exploring symbiont management in lichens.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

A Monograph of the Lichen Genus Parmelia Acharius sensu stricto (Ascomycotina: Parmeliaceae)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Molecular phylogeny and historical biogeography of the lichen-forming fungal genus Flavoparmelia (Ascomycota: Parmeliaceae)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Molecular data show that Bryoria fremontii and B. tortuosa ( Parmeliaceae) are conspecific

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Morphological and molecular evidence places Maronina into synonymy with Protoparmelia (Ascomycota: Lecanorales)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Further analysts of the data by akaike' s information criterion and the finite corrections

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

The genus Ramboldia (Lecanoraceae): a new species, key and notes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Further observations on the genus Maronina, with descriptions of two new taxa from Thailand

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Insights into intrathalline genetic diversity of the cosmopolitan lichen symbiotic green alga Trebouxia decolorans Ahmadjian using microsatellite markers

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Another example of cryptic diversity in lichen-forming fungi: the new species Parmelia mayi (Ascomycota: Parmeliaceae)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Genetic variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Generic concepts in parmelioid lichens, and the phylogenetic value of characters used in their circumscription

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Phenotypical plasticity and homoplasy complicate species delimitation in the Cladonia gracilis group (Cladoniaceae, Ascomycota)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

A review of the lichen family Parmeliaceae - history, phylogeny and current taxonomy

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

Parmelina quercina (Parmeliaceae, Lecanorales) includes four phylogenetically supported morphospecies

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0124625

21 January 2018

New bottles for old wine: fruit body types, phylogeny, and classification

1 reference

https://pubmed.ncbi.nlm.nih.gov/25932996

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1371/JOURNAL.PONE.0124625

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Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25932996%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

2015PLoSO..1024625S

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OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

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PMC publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25932996%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

PubMed publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25932996%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

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