(Q28547190)

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Combining the Estimated Date of HIV Infection with a Phylogenetic Cluster Study to Better Understand HIV Spread: Application in a Paris Neighbourhood

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scholarly article

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Combining the Estimated Date of HIV Infection with a Phylogenetic Cluster Study to Better Understand HIV Spread: Application in a Paris Neighbourhood (English)

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Marie-Laure Chaix

6

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Laurence Morand-Joubert

9

object named as

Laurence Morand-Joubert

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3

object named as

Francis Barin

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Françoise Cazein

4

object named as

Françoise Cazein

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Pierre-Yves Boëlle

8

object named as

Pierre-Yves Boelle

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Pierre-Marie Girard

5

object named as

Pierre-Marie Girard

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author name string

Olivier Robineau

1

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Pierre Frange

2

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Georges Kreplak

7

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publication date

2015

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10

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8

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e0135367

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copyright license

Creative Commons Attribution 4.0 International

12 August 2015

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April 2022 Public Data File from Crossref

copyright status

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HIV-1 transmission during early infection in men who have sex with men: a phylodynamic analysis

1 reference

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19 March 2017

Recent HIV-1 infection contributes to the viral diffusion over the French territory with a recent increasing frequency

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19 March 2017

Episodic sexual transmission of HIV revealed by molecular phylodynamics

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19 March 2017

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

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19 March 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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19 March 2017

The neighbor-joining method: a new method for reconstructing phylogenetic trees

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19 March 2017

Running in Place: Implications of HIV Incidence Estimates among Urban Men Who Have Sex with Men in the United States and Other Industrialized Countries

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What drives the US and Peruvian HIV epidemics in men who have sex with men (MSM)?

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29 September 2017

Biomarker-based HIV incidence in a community sample of men who have sex with men in Paris, France

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29 September 2017

Phylogenetic insights into regional HIV transmission

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29 September 2017

Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec

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Dates of HIV infection can be estimated for seroprevalent patients by coalescent analysis of serial next-generation sequencing data

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29 September 2017

27 years of the HIV epidemic amongst men having sex with men in the Netherlands: an in depth mathematical model-based analysis

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29 September 2017

Population-based HIV-1 incidence in France, 2003-08: a modelling analysis.

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29 September 2017

Public health rationale for rapid nucleic acid or p24 antigen tests for HIV.

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29 September 2017

Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom

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29 September 2017

Performance of an immunoassay at detecting recent infection among reported HIV diagnoses

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29 September 2017

High rates of forward transmission events after acute/early HIV-1 infection

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29 September 2017

HIV-1 protease and reverse transcriptase mutations for drug resistance surveillance

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29 September 2017

Development and validation of an immunoassay for identification of recent human immunodeficiency virus type 1 infections and its use on dried serum spots

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29 September 2017

Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups

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29 September 2017

Determinants of HIV-1 transmission in men who have sex with men: a combined clinical, epidemiological and phylogenetic approach

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21 January 2018

Importance of promoting HIV testing for preventing secondary transmissions: modelling the Australian HIV epidemic among men who have sex with men.

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21 January 2018

Phylogenetic reconstruction of transmission events from individuals with acute HIV infection: toward more-rigorous epidemiological definitions

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21 January 2018

An alternating least squares approach to inferring phylogenies from pairwise distances.

1 reference

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21 January 2018

HIV-1 pol gene variation is sufficient for reconstruction of transmissions in the era of antiretroviral therapy.

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21 January 2018

HIV prevalence and sexual risk behaviors associated with awareness of HIV status among men who have sex with men in Paris, France

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21 January 2018

Transmission of HIV-1 during primary infection: relationship to sexual risk and sexually transmitted infections.

1 reference

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21 January 2018

Impact of highly active antiretroviral therapy on the molecular epidemiology of newly diagnosed HIV infections

1 reference

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21 January 2018

Longitudinal phylogenetic surveillance identifies distinct patterns of cluster dynamics

1 reference

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21 January 2018

HIV type-1 transmission dynamics in recent seroconverters: relationship with transmission of drug resistance and viral diversity.

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27 November 2018

Investigation of HIV-1 transmission events by phylogenetic methods: requirement for scientific rigour

1 reference

https://pubmed.ncbi.nlm.nih.gov/26267615

12 December 2020

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10.1371/JOURNAL.PONE.0135367

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2015PLoSO..1035367R

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