(Q28550072)

26 June 2017

title

Detecting Horizontal Gene Transfer between Closely Related Taxa (English)

1 reference

26 June 2017

main subject

horizontal gene transfer

0 references

Uri Gophna

3

0 references

author name string

Orit Adato

series ordinal

1

1 reference

26 June 2017

Noga Ninyo

series ordinal

2

1 reference

26 June 2017

Sagi Snir

series ordinal

4

1 reference

26 June 2017

language of work or name

English

0 references

publication date

6 October 2015

1 reference

PLOS Computational Biology

26 June 2017

published in

1 reference

26 June 2017

volume

11

1 reference

26 June 2017

issue

10

1 reference

26 June 2017

page(s)

e1004408

1 reference

Creative Commons Attribution 4.0 International

26 June 2017

copyright license

start time

6 October 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Genomic regulatory blocks underlie extensive microsynteny conservation in insects

19 March 2017

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19 March 2017

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From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

19 March 2017

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Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

19 March 2017

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Lateral gene transfer and the nature of bacterial innovation

19 March 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

19 March 2017

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Phylogenetic classification and the universal tree

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Horizontal gene transfer in prokaryotes: quantification and classification

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Amelioration of bacterial genomes: rates of change and exchange

7 April 2017

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Phylo SI: a new genome-wide approach for prokaryotic phylogeny

7 April 2017

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Stability along with extreme variability in core genome evolution

29 September 2017

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Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes

29 September 2017

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A phylogenomic analysis of Escherichia coli / Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Predicting plasmid promiscuity based on genomic signature

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Inferring and validating horizontal gene transfer events using bipartition dissimilarity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

29 September 2017

Bacterial pathogenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

DarkHorse: a method for genome-wide prediction of horizontal gene transfer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Horizontal gene transfer of PIB-type ATPases among bacteria isolated from radionuclide- and metal-contaminated subsurface soils

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Highways of gene sharing in prokaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Horizontal gene transfer, genome innovation and evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Biased biological functions of horizontally transferred genes in prokaryotic genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Neutral mutations and neutral substitutions in bacterial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Phylogenetics and the cohesion of bacterial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Evolutionary implications of microbial genome tetranucleotide frequency biases

29 September 2017

1 reference

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HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

29 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Proteome analysis of Escherichia coli K-12 by two-dimensional native-state chromatography and MALDI-MS.

29 September 2017

1 reference

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Genome trees and the tree of life

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Horizontal gene transfer in bacterial and archaeal complete genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Spermidine acetyltransferase is required to prevent spermidine toxicity at low temperatures in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Pathogenic strategies of enteric bacteria.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Global dinucleotide signatures and analysis of genomic heterogeneity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

The guanine and cytosine content of genomic DNA and bacterial evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Alignment uncertainty and genomic analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids.

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004408

Inferring phylogenetic networks by the maximum parsimony criterion: a case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004408

Uniting Alignments and Trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004408

Reconciling the many faces of lateral gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004408

Limitations of compositional approach to identifying horizontally transferred genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004408

Efficient parsimony-based methods for phylogenetic network reconstruction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004408

Simultaneous identification of duplications and lateral gene transfers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004408

Properties and structure of spermidine acetyltransferase in Escherichia coli

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4595140

Evolution: Genomic pacemakers or ticking clocks?

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26439115

12 December 2020

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/26439115

12 December 2020

inferred from PubMed ID database lookup

Purification & properties of valyl-tRNA synthetase from Mycobacterium tuberculosis H37Rv

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26439115

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PCBI.1004408

1 reference

journals/ploscb/AdatoNGS15

26 June 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_3bq6f62qxfazvk3ypvprxca7oe

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3bq6f62qxfazvk3ypvprxca7oe

24 November 2022

mapped directly with Wikidata item

OpenCitations bibliographic resource ID

4188767

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4188767

1 reference