(Q28550507)

Nadine Holmes

2

0 references

Grant A Hill-Cawthorne

Grant A Hill-Cawthorne

6

0 references

Vitali Sintchenko

Vitali Sintchenko

9

0 references

Lyn Gilbert

7

Gwendolyn L Gilbert

0 references

Peter Jelfs

5

Peter Jelfs

0 references

author name string

Alexander C Outhred

1

0 references

Elena Martinez

4

0 references

Ben J Marais

Creative Commons Attribution 4.0 International

8

0 references

language of work or name

English

0 references

publication date

2016

0 references

published in

PLOS One

0 references

volume

11

0 references

issue

3

0 references

page(s)

e0150550

0 references

copyright license

start time

3 March 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients

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MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

19 March 2017

1 reference

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Use of whole genome sequencing to determine the microevolution of Mycobacterium tuberculosis during an outbreak

19 March 2017

1 reference

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BayesHammer: Bayesian clustering for error correction in single-cell sequencing

19 March 2017

1 reference

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Insights from genomics into bacterial pathogen populations

19 March 2017

1 reference

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DELLY: structural variant discovery by integrated paired-end and split-read analysis

19 March 2017

1 reference

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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

19 March 2017

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Bayesian phylogenetics with BEAUti and the BEAST 1.7

19 March 2017

1 reference

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Genomic stability over 9 years of an isoniazid resistant Mycobacterium tuberculosis outbreak strain in Sweden

19 March 2017

1 reference

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Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis

19 March 2017

1 reference

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Variable host-pathogen compatibility in Mycobacterium tuberculosis

19 March 2017

1 reference

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A new evolutionary scenario for the Mycobacterium tuberculosis complex

19 March 2017

1 reference

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Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

19 March 2017

1 reference

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Mauve: multiple alignment of conserved genomic sequence with rearrangements

19 March 2017

1 reference

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Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology

7 April 2017

1 reference

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Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

7 April 2017

1 reference

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progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

7 April 2017

1 reference

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Temporal dynamics of Mycobacterium tuberculosis genotypes in New South Wales, Australia

7 April 2017

1 reference

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Whole-genome sequencing to detect recent transmission of Mycobacterium tuberculosis in settings with a high burden of tuberculosis

29 September 2017

1 reference

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Automated reconstruction of whole-genome phylogenies from short-sequence reads

29 September 2017

1 reference

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Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study

29 September 2017

1 reference

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Sterilization of granulomas is common in active and latent tuberculosis despite within-host variability in bacterial killing

29 September 2017

1 reference

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Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

29 September 2017

1 reference

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Epidemic spread of multidrug-resistant tuberculosis in Johannesburg, South Africa

29 September 2017

1 reference

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Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak

29 September 2017

1 reference

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Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

29 September 2017

1 reference

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LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

29 September 2017

1 reference

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Mixed-strain mycobacterium tuberculosis infections and the implications for tuberculosis treatment and control

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4777479

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

29 September 2017

1 reference

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Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis

29 September 2017

1 reference

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Tuberculosis in Australia: bacteriologically-confirmed cases and drug resistance, 2011. A report of the Australian Mycobacterium Reference Laboratory Network

29 September 2017

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Tuberculosis notifications in Australia, 2011.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4777479

High-throughput microbial population genomics using the Cortex variation assembler

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4777479

r2cat: synteny plots and comparative assembly

3 June 2018

1 reference

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Enhanced tuberculosis outbreak investigation using whole genome sequencing and IGRA.

3 June 2018

1 reference

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Whole genome sequencing analysis of intrapatient microevolution in Mycobacterium tuberculosis: potential impact on the inference of tuberculosis transmission.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0150550

Ongoing transmission of tuberculosis in Aboriginal communities in NSW.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0150550

Impact of homoplasy on variable numbers of tandem repeats and spoligotypes in Mycobacterium tuberculosis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0150550

Evolutionary robust SNPs reveal the misclassification of Mycobacterium tuberculosis Beijing family strains into sublineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0150550

Deep resequencing of serial sputum isolates of Mycobacterium tuberculosis during therapeutic failure due to poor compliance reveals stepwise mutation of key resistance genes on an otherwise stable genetic background.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0150550

TubercuList--10 years after

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0150550

10.1371/JOURNAL.PONE.0150550

21 January 2018

Identifiers

DOI

1 reference

ADS bibcode

2016PLoSO..1150550O

0 references

1 reference

1 reference

PubMed publication ID

26938641

1 reference