(Q28582262)

21 June 2017

title

Transcriptome characterization by RNA-Seq reveals the involvement of the complement components in noise-traumatized rat cochleae (English)

1 reference

21 June 2017

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1 reference

M Patel

1

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21 June 2017

Z Hu

2

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21 June 2017

J Bard

3

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21 June 2017

J Jamison

4

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21 June 2017

Q Cai

5

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21 June 2017

B H Hu

6

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21 June 2017

language of work or name

English

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publication date

30 May 2013

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21 June 2017

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21 June 2017

volume

248

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21 June 2017

page(s)

1-16

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describes a project that uses

21 June 2017

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Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome

1 reference

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GABAergic gene expression in postmortem hippocampus from alcoholics and cocaine addicts; corresponding findings in alcohol-naïve P and NP rats

17 March 2017

1 reference

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Postexposure treatment with a Src-PTK inhibitor in combination with N-l-acetyl cysteine to reduce noise-induced hearing loss

17 March 2017

1 reference

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Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq

17 March 2017

1 reference

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RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti

17 March 2017

1 reference

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Emerging treatments for noise-induced hearing loss

17 March 2017

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

17 March 2017

1 reference

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TopHat: discovering splice junctions with RNA-Seq

17 March 2017

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

17 March 2017

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

17 March 2017

1 reference

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17 March 2017

1 reference

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The role of oxidative stress in noise-induced hearing loss

17 March 2017

1 reference

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Proinflammatory cytokines expression in noise-induced damaged cochlea

17 March 2017

1 reference

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Down-regulation of tissue inhibitor of matrix metalloprotease-1 (TIMP-1) in aged human skin contributes to matrix degradation and impaired cell growth and survival

17 March 2017

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Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

17 March 2017

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Metalloproteinases and their associated genes contribute to the functional integrity and noise-induced damage in the cochlear sensory epithelium

7 April 2017

1 reference

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Library preparation and data analysis packages for rapid genome sequencing

29 September 2017

1 reference

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Guilty molecules, guilty minds? The conflicting roles of the innate immune response to traumatic brain injury

29 September 2017

1 reference

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Identification of new altered genes in rat cochleae with noise-induced hearing loss

29 September 2017

1 reference

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1 reference

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Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.

29 September 2017

1 reference

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Transcriptional changes in adhesion-related genes are site-specific during noise-induced cochlear pathogenesis

29 September 2017

1 reference

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RNA-Seq analyses generate comprehensive transcriptomic landscape and reveal complex transcript patterns in hepatocellular carcinoma

29 September 2017

1 reference

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Genome-Wide Gene Expression Profiling of Nucleus Accumbens Neurons Projecting to Ventral Pallidum Using both Microarray and Transcriptome Sequencing

29 September 2017

1 reference

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Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys

29 September 2017

1 reference

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Towards gene therapy for deafness.

29 September 2017

1 reference

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Whole-transcriptome RNAseq analysis from minute amount of total RNA.

29 September 2017

1 reference

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29 September 2017

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Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

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Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing

29 September 2017

1 reference

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Defining the transcriptome and proteome in three functionally different human cell lines

29 September 2017

1 reference

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Highly consistent, fully representative mRNA-Seq libraries from ten nanograms of total RNA.

29 September 2017

1 reference

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RNA-Seq analysis to capture the transcriptome landscape of a single cell

29 September 2017

1 reference

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The injured cochlea as a target for inflammatory processes, initiation of cell death pathways and application of related otoprotectives strategies

29 September 2017

1 reference

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Acoustic overstimulation modifies Mcl-1 expression in cochlear sensory epithelial cells

29 September 2017

1 reference

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An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

29 September 2017

1 reference

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29 September 2017

1 reference

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Gene therapy and stem cell transplantation: strategies for hearing restoration

29 September 2017

1 reference

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Differential expression of apoptosis-related genes in the cochlea of noise-exposed rats

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing

29 September 2017

1 reference

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29 September 2017

1 reference

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Acoustic trauma augments the cochlear immune response to antigen

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Membrane disruption: an early event of hair cell apoptosis induced by exposure to intense noise

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Reproducible and reliable microarray results through quality control: good laboratory proficiency and appropriate data analysis practices are essential

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Characterization of mutations in complement factor I (CFI) associated with hemolytic uremic syndrome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

CC chemokine receptor 2 is protective against noise-induced hair cell death: studies in CX3CR1(+/GFP) mice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Mechanisms of hair cell death and protection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Quantitative immunohistochemistry of fluorescence labelled probes using low-cost software

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Independence and reproducibility across microarray platforms

29 September 2017

1 reference

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QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies

29 September 2017

1 reference

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Computational strategies for analyzing data in gene expression microarray experiments

29 September 2017

1 reference

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Gene expression profiling: from microarrays to medicine.

29 September 2017

1 reference

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29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Expression of complement components in the peripheral nervous system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Progressive hearing loss and increased susceptibility to noise-induced hearing loss in mice carrying a Cdh23 but not a Myo7a mutation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Practical approaches to analyzing results of microarray experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

TIMP-1 overexpression in pancreatic cancer attenuates tumor growth, decreases implantation and metastasis, and inhibits angiogenesis

29 September 2017

1 reference

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Up-regulated production and activation of the complement system in Alzheimer's disease brain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Cascade system activation in shock.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Effects of noise and ototoxic drugs at the cellular level in the cochlea: a review

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Bronchioloalveolarcell carcinoma as a solitary nodule (15 cases); 1st part (author's transl)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

RNA sequencing shows no dosage compensation of the active X-chromosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Blockade of interleukin-6 signaling suppressed cochlear inflammatory response and improved hearing impairment in noise-damaged mice cochlea

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Involvement of apoptosis in progression of cochlear lesion following exposure to intense noise

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Degeneration in the cochlea after noise damage: primary versus secondary events

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Biosynthesis in vitro of complement subcomponents C1q, C1s and C1̅ inhibitor by resting and stimulated human monocytes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Effects on the inner and outer hair cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Biosynthesis of the subcomponents C1q, C1r and C1s of the first component of complement (C1) by guinea pig hepatocyte primary cultures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Lipocalin 2 is a novel immune mediator of experimental autoimmune encephalomyelitis pathogenesis and is modulated in multiple sclerosis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Toll-like receptor 2 and Toll-like receptor 4 participates in mediation of acute otitis media and mortality in pneumococcal infections in mice

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

27 November 2018

The UCSC Genome Browser

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Carboxy alkyl esters of Uncaria tomentosa augment recovery of sensorineural functions following noise injury

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Low-dose D-methionine and N-acetyl-L-cysteine for protection from permanent noise-induced hearing loss in chinchillas

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Chemokine CXCL11 links microbial stimuli to intestinal inflammation

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Protective effects of brain-derived neurotrophic factor on the noise-damaged cochlear spiral ganglion

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Differential expression of toll-like receptors 2 and 4 in rat middle ear.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Immune cell recruitment following acoustic trauma

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Differential gene expression in the rat cochlea after exposure to impulse noise.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Extremely rapid induction of outer hair cell apoptosis in the chinchilla cochlea following exposure to impulse noise.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Mononuclear phagocytes migrate into the murine cochlea after acoustic trauma

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Quantitative analysis of apoptotic and necrotic outer hair cells after exposure to different levels of continuous noise

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Injury primes the innate immune system for enhanced Toll-like receptor reactivity

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Gene Expression Changes in Chinchilla Cochlea from Noise-Induced Temporary Threshold Shift

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Variation in inter-animal susceptibility to noise damage is associated with alpha 9 acetylcholine receptor subunit expression level.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Vascular smooth muscle cells and pericytes express MMP-1, MMP-9, TIMP-1 and type I procollagen in inflammatory bowel disease

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Histopathological differences between temporary and permanent threshold shift.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Contribution of secretory leukocyte proteinase inhibitor to the antiprotease defense system of the peripheral lung: effect of ozone-induced acute inflammation

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Variability of noise-induced damage in the guinea pig cochlea: electrophysiological and morphological correlates after strictly controlled exposures.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868636

Intragraft transcriptome level of CXCL9 as biomarker of acute cellular rejection after liver transplantation

27 November 2018

1 reference

12 December 2020

CD4+CD25+ regulatory T cells control innate immune reactivity after injury

1 reference

12 December 2020

Altered Toll- and Nod-like receptor expression in human middle ear mucosa from patients with chronic middle ear disease

1 reference

12 December 2020

Regulation of CCL20 expression in astrocytes by IL-6 and IL-17

1 reference

12 December 2020

Identification of a novel human granzyme B inhibitor secreted by cultured sertoli cells

1 reference

12 December 2020

10.1016/J.NEUROSCIENCE.2013.05.038

Identifiers

DOI

1 reference

OpenCitations bibliographic resource ID

21 June 2017

4800012

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4800012

PMC publication ID

3868636

0 references

1 reference