(Q28597455)

1

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Judy D Brown

2

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Chu Zhang

3

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Michael J O'Neill

4

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Rachel J O'Neill

Genome Biology and Evolution

5

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language of work or name

English

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publication date

29 January 2015

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published in

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volume

7

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issue

3

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page(s)

775-88

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cites work

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Genomic relationship between SINE retrotransposons, Pol III-Pol II transcription, and chromatin organization: the journey from junk to jewel

17 March 2017

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Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

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The expanding RNA polymerase III transcriptome

17 March 2017

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P bodies: at the crossroads of post-transcriptional pathways

17 March 2017

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Phylogenomics of the genus Mus (Rodentia; Muridae): extensive genome repatterning is not restricted to the house mouse

17 March 2017

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Polyadenylation of ribosomal RNA in human cells

17 March 2017

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Functional noncoding sequences derived from SINEs in the mammalian genome

17 March 2017

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17 March 2017

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A new mathematical model for relative quantification in real-time RT-PCR

17 March 2017

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17 March 2017

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Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition

17 March 2017

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A human Alu RNA-binding protein whose expression is associated with accumulation of small cytoplasmic Alu RNA

17 March 2017

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Alu sequences are processed 7SL RNA genes

17 March 2017

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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

17 March 2017

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TimeTree: a public knowledge-base of divergence times among organisms

7 April 2017

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Repbase Update, a database of eukaryotic repetitive elements

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Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence

7 April 2017

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LINE-mediated retrotransposition of marked Alu sequences

7 April 2017

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Biology of mammalian L1 retrotransposons

7 April 2017

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Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons

7 April 2017

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The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads

9 May 2017

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Unique small RNA signatures uncovered in the tammar wallaby genome

29 September 2017

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Pericentric and centromeric transcription: a perfect balance required

29 September 2017

1 reference

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R2 and R2/R1 hybrid non-autonomous retrotransposons derived by internal deletions of full-length elements

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

The regulation of mRNA stability in mammalian cells: 2.0.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Abundant human DNA contamination identified in non-primate genome databases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Which transposable elements are active in the human genome?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Short retroposons in eukaryotic genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

LINEs, SINEs and processed pseudogenes: parasitic strategies for genome modeling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Recruitment of RNA polymerase III to its target promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Survey and summary: transcription by RNA polymerases I and III.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

A human 28S ribosomal RNA retropseudogene

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Repeat sequence families derived from mammalian tRNA genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Structure and organization of ribosomal DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Divergent patterns of breakpoint reuse in Muroid rodents.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Standardized nomenclature for Alu repeats.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

A model for the mechanism of initial generation of short interspersed elements (SINEs).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Characterization of a human orphon 28 S ribosomal DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4994717

Hypermorphic expression of centromeric retroelement-encoded small RNAs impairs CENP-A loading

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV015

A novel abundant family of retroposed elements (DAS-SINEs) in the nine-banded armadillo (Dasypus novemcinctus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV015

Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV015

5S rRNA-derived and tRNA-derived SINEs in fruit bats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV015

A novel class of SINE elements derived from 5S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVV015

21 January 2018

Identifiers

DOI

10.1093/GBE/EVV015

1 reference

1 reference

1 reference

PubMed publication ID

25637222

1 reference