(Q28601891)

8

object named as

Curtis A Suttle

0 references

Brian S. Leander

4

object named as

Brian S Leander

0 references

author name string

Richard Allen White

1

0 references

Gregory S Gavelis

3

0 references

Allyson L Brady

5

0 references

Gregory F Slater

6

0 references

Darlene S S Lim

Frontiers in Microbiology

7

0 references

language of work or name

English

0 references

publication date

2015

0 references

published in

1 reference

describes a project that uses

volume

6

0 references

page(s)

1531

0 references

ggplot2

object named as

ggplot2

2 references

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4729913

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Metagenomic and metabolic profiling of nonlithifying and lithifying stromatolitic mats of Highborne Cay, The Bahamas

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Fast gapped-read alignment with Bowtie 2

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Prokaryotic and eukaryotic community structure in field and cultured microbialites from the alkaline Lake Alchichica (Mexico)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Strategies for metagenomic-guided whole-community proteomics of complex microbial environments

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Adaptive seeds tame genomic sequence comparison

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Accurate whole human genome sequencing using reversible terminator chemistry

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Comparative characterization of the microbial diversities of an artificial microbialite model and a natural stromatolite

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Fossil evidence of Archaean life

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Microbial diversity of extant stromatolites in the hypersaline marine environment of Shark Bay, Australia

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Quality control and preprocessing of metagenomic datasets

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Phylogenetic diversity of a microbialite reef in a cold alkaline freshwater lake.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Cyanophycin mediates the accumulation and storage of fixed carbon in non-heterocystous filamentous cyanobacteria from coniform mats

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Draft Genome Sequence of Exiguobacterium pavilionensis Strain RW-2, with Wide Thermal, Salinity, and pH Tolerance, Isolated from Modern Freshwater Microbialites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Metabolic potential of lithifying cyanobacteria-dominated thrombolitic mats

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Biomineralization of calcium carbonate polymorphs by the bacterial strains isolated from calcareous sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Ray Meta: scalable de novo metagenome assembly and profiling.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Microbialite genetic diversity and composition relate to environmental variables.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Cyanobacterial diversity and activity in modern conical microbialites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Environmental conditions that influence toxin biosynthesis in cyanobacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Metagenomic analysis of stress genes in microbial mat communities from Antarctica and the High Arctic.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Modern carbonate microbialites from an asbestos open pit pond, Yukon, Canada

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Bacterial diversity in dry modern freshwater stromatolites from Ruidera Pools Natural Park, Spain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Identifying biologically relevant differences between metagenomic communities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

In situ determination of the effects of lead and copper on cyanobacterial populations in microcosms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Digital PCR provides sensitive and absolute calibration for high throughput sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Biodiversity and biogeography of phages in modern stromatolites and thrombolites.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Use of ultrafiltration to isolate viruses from seawater which are pathogens of marine phytoplankton.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Microbial lithification in marine stromatolites and hypersaline mats

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Strain-specific ureolytic microbial calcium carbonate precipitation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Stromatolites in Precambrian carbonates: evolutionary mileposts or environmental dipsticks?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

GlbN (cyanoglobin) is a peripheral membrane protein that is restricted to certain Nostoc spp.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Amplification of DNA polymerase gene fragments from viruses infecting microalgae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

The Draft Genome Sequence of Sphingomonas paucimobilis Strain HER1398 (Proteobacteria), Host to the Giant PAU Phage, Indicates That It Is a Member of the Genus Sphingobacterium (Bacteroidetes).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

First draft genome sequence from a member of the genus agrococcus, isolated from modern microbialites

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4729913

Constraining carbon sources and growth rates of freshwater microbialites in Pavilion Lake using (14)C analysis

3 June 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Photosynthetic isotope biosignatures in laminated micro-stromatolitic and non-laminated nodules associated with modern, freshwater microbialites in Pavilion Lake, B.C

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Bio-deposition of a calcium carbonate layer on degraded limestone by Bacillus species

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Modern Freshwater Microbialites from Kelly Lake, British Columbia, Canada

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Inside the alkalinity engine: the role of electron donors in the organomineralization potential of sulfate-reducing bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Giant Holocene Freshwater Microbialites, Laguna Bacalar, Quintana Roo, Mexico

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Modern freshwater microbialite analogues for ancient dendritic reef structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

A historical overview of the Pavilion Lake Research Project—Analog science and exploration in an underwater environment

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Reconstruction of limnology and microbialite formation conditions from carbonate clumped isotope thermometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Bacterial diversity and carbonate precipitation in the giant microbialites from the highly alkaline Lake Van, Turkey

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

The role of microbes in accretion, lamination and early lithification of modern marine stromatolites

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Pvclust: an R package for assessing the uncertainty in hierarchical clustering.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Carbonate fabrics in the modern microbialites of Pavilion Lake: two suites of microfabrics that reflect variation in microbial community morphology, growth habit, and lithification

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Defining biominerals and organominerals: Direct and indirect indicators of life

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Production of Calcite (Calcium Carbonate) Crystals by Soil Bacteria is a General Phenomenon

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Processes of carbonate precipitation in modern microbial mats

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2015.01531

Exposure of juvenile Leghorn chickens to lead acetate enhances antibiotic resistance in enteric bacterial flora

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26903951

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FMICB.2015.01531

1 reference

1 reference

1 reference

PubMed publication ID

26903951

1 reference