(Q28602099)

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Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples

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Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples (English)

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2

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27239228%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

5

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7 June 2020

author name string

Angela Glassing

1

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Europe PubMed Central

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7 June 2020

Susan Galandiuk

3

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Europe PubMed Central

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7 June 2020

Brian Davis

4

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7 June 2020

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2016

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7 June 2020

8

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7 June 2020

1

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24

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Europe PubMed Central

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7 June 2020

https://scigraph.springernature.com/pub.10.1186/s13099-016-0103-7

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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

17 March 2017

Microbial dysbiosis is associated with human breast cancer

1 reference

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17 March 2017

Multiple sources of contamination in samples from patients reported to have XMRV infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

17 March 2017

Contamination and sensitivity issues with a real-time universal 16S rRNA PCR

1 reference

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17 March 2017

A molecular view of microbial diversity and the biosphere

1 reference

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17 March 2017

Evidence for life on Earth before 3,800 million years ago

1 reference

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17 March 2017

Ancient DNA: do it right or not at all

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

7 April 2017

Leaky gut - concept or clinical entity?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Changes in 16s RNA Gene Microbial Community Profiling by Concentration of Prokaryotic DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Microbial Population Differentials between Mucosal and Submucosal Intestinal Tissues in Advanced Crohn's Disease of the Ileum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Leprous lesion presents enrichment of opportunistic pathogenic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Metagenome and metabolism: the tissue microbiota hypothesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Evaluation of an ethidium monoazide-enhanced 16S rDNA real-time polymerase chain reaction assay for bacterial screening of platelet concentrates and comparison with automated culture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Crohn's disease and the mycobacterioses: a quarter century later. Causation or simple association?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Isolation of nucleic acids and cultures from fossil ice and permafrost

1 reference

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29 September 2017

Distribution of bacteria within operating laboratory water purification systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

29 September 2017

Crohn's disease may be differentiated into 2 distinct biotypes based on the detection of bacterial genomic sequences and virulence genes within submucosal tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

3 June 2018

Development of an ethidium monoazide-enhanced internally controlled universal 16S rDNA real-time polymerase chain reaction assay for detection of bacterial contamination in platelet concentrates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

3 June 2018

Evaluation of universal probes and primer sets for assessing total bacterial load in clinical samples: general implications and practical use in endodontic antimicrobial therapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

3 June 2018

Ethidium monoazide and propidium monoazide for elimination of unspecific DNA background in quantitative universal real-time PCR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

27 November 2018

Prediction of effective genome size in metagenomic samples

1 reference

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27 November 2018

Sensitive, real-time PCR detects low-levels of contamination by Legionella pneumophila in commercial reagents.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

27 November 2018

Survival and nutritional requirements of three bacteria isolated from ultrapure water

1 reference

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27 November 2018

Taq polymerase contains bacterial DNA of unknown origin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4882852

27 November 2018

Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set

1 reference

https://pubmed.ncbi.nlm.nih.gov/27239228

12 December 2020

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10.1186/S13099-016-0103-7

2 references

Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27239228%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

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24 November 2022

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27239228%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27239228%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

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