(Q30951053)

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Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data.

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

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Geraint B Rogers

10

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Heidi Smith-Vaughan

6

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Heidi C Smith-Vaughan

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

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Jake Jervis-Bardy

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Shashikanth Marri

3

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Renee J Smith

4

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Jocelyn M Choo

5

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Elizabeth Nosworthy

7

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Peter S Morris

8

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Stephen O'Leary

9

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Robyn L Marsh

11

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

publication date

5 May 2015

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

3

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

19

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

copyright license

Creative Commons Attribution 4.0 International

5 May 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

object named as

Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Tracking down the sources of experimental contamination in microbiome studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Assessment of quality control approaches for metagenomic data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients

1 reference

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21 June 2018

Kraken: ultrafast metagenomic sequence classification using exact alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

PEAR: a fast and accurate Illumina Paired-End reAd mergeR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Advancing our understanding of the human microbiome using QIIME

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

The effects of airway microbiome on corticosteroid responsiveness in asthma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Microbial communities in the respiratory tract of patients with interstitial lung disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

New perspectives on viable microbial communities in low-biomass cleanroom environments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Quantitative PCR of ear discharge from Indigenous Australian children with acute otitis media with perforation supports a role for Alloiococcus otitidis as a secondary pathogen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Deep sequencing analyses of low density microbial communities: working at the boundary of accurate microbiota detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

UCHIME improves sensitivity and speed of chimera detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Fast identification and removal of sequence contamination from genomic and metagenomic datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Search and clustering orders of magnitude faster than BLAST

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

QIIME allows analysis of high-throughput community sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4428251

21 June 2018

Bacterial colonization of the nasopharynx predicts very early onset and persistence of otitis media in Australian aboriginal infants

1 reference

https://pubmed.ncbi.nlm.nih.gov/25969736

12 December 2020

based on heuristic

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Identifiers

10.1186/S40168-015-0083-8

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s40168-015-0083-8

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25969736%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

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