(Q34090756)

30 July 2017

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences (English)

1 reference

30 July 2017

Yan He

2

0 references

Sean M. Gibbons

object named as

Sean M Gibbons

6

0 references

Rob Knight

object named as

Rob Knight

15

0 references

Susan M Huse

13

object named as

Susan M Huse

1 reference

30 July 2017

16

J Gregory Caporaso

1 reference

30 July 2017

8

Daniel McDonald

1 reference

30 July 2017

3

Jose A Navas-Molina

1 reference

30 July 2017

9

Antonio Gonzalez

1 reference

30 July 2017

1

Jai Ram Rideout

1 reference

30 July 2017

12

Jack A Gilbert

1 reference

30 July 2017

4

William A Walters

1 reference

30 July 2017

7

John Chase

1 reference

30 July 2017

11

Jose C Clemente

1 reference

30 July 2017

10

Adam Robbins-Pianka

1 reference

30 July 2017

Luke K Ursell

5

1 reference

PubMed ID

25177538

30 July 2017

Hong-Wei Zhou

14

1 reference

30 July 2017

21 August 2014

1 reference

30 July 2017

1 reference

30 July 2017

2

1 reference

30 July 2017

e545

1 reference

PubMed ID

25177538

describes a project that uses

30 July 2017

Jupyter notebook file

1 reference

Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Advancing our understanding of the human microbiome using QIIME

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Human gut microbiome viewed across age and geography

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Moving pictures of the human microbiome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Search and clustering orders of magnitude faster than BLAST

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

QIIME allows analysis of high-throughput community sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Bacterial community variation in human body habitats across space and time

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

UniFrac: a new phylogenetic method for comparing microbial communities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

The detection of disease clustering and a generalized regression approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145071

5 July 2018

Identifiers

DOI

10.7717/PEERJ.545

1 reference

release_ig42buhwozhgpf3cakxbh7okae

30 July 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ig42buhwozhgpf3cakxbh7okae

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

4145071

1 reference

30 July 2017

1 reference

PubMed ID

25177538