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Metadata management for high content screening in OMERO
scientific article
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instance of
scholarly article
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title
Metadata management for high content screening in OMERO
(English)
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main subject
metadata
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author
Gabriella Rustici
series ordinal
14
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Dominik Lindner
object named as
Dominik Lindner
series ordinal
9
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Sébastien Besson
object named as
Sébastien Besson
series ordinal
2
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Josh Moore
object named as
Josh Moore
series ordinal
20
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Aleksandra Tarkowska
object named as
Aleksandra Tarkowska
series ordinal
15
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Eleanor Williams
object named as
Eleanor Williams
series ordinal
17
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Jason Swedlow
object named as
Jason R Swedlow
series ordinal
21
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Helen Flynn
object named as
Helen Flynn
series ordinal
6
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Richard K Ferguson
object named as
Richard K Ferguson
series ordinal
5
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author name string
Simon Li
series ordinal
1
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Colin Blackburn
series ordinal
3
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Mark Carroll
series ordinal
4
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Kenneth Gillen
series ordinal
7
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Roger Leigh
series ordinal
8
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Melissa Linkert
series ordinal
10
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William J Moore
series ordinal
11
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Balaji Ramalingam
series ordinal
12
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Emil Rozbicki
series ordinal
13
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Petr Walczysko
series ordinal
16
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Chris Allan
series ordinal
18
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Jean-Marie Burel
series ordinal
19
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language of work or name
English
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publication date
1 March 2016
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published in
Methods
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volume
96
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page(s)
27-32
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cites work
Publishing and sharing multi-dimensional image data with OMERO
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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17 March 2017
Multiplex cytological profiling assay to measure diverse cellular states
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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17 March 2017
A novel single-cell screening platform reveals proteome plasticity during yeast stress responses
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
17 March 2017
TRIP12 and UBR5 suppress spreading of chromatin ubiquitylation at damaged chromosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
17 March 2017
OMERO: flexible, model-driven data management for experimental biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
17 March 2017
Metadata matters: access to image data in the real world
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
17 March 2017
The Ontology Lookup Service: bigger and better
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
17 March 2017
The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
17 March 2017
Informatics and quantitative analysis in biological imaging
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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17 March 2017
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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7 April 2017
Quantitative detection of rare interphase chromosome breaks and translocations by high-throughput imaging
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
Length-dependent anisotropic scaling of spindle shape
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
A genomic Multiprocess survey of machineries that control and link cell shape, microtubule organization, and cell-cycle progression
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
Metadata Standard and Data Exchange Specifications to Describe, Model, and Integrate Complex and Diverse High-Throughput Screening Data from the Library of Integrated Network-based Cellular Signatures (LINCS).
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
29 September 2017
A genome-wide screen identifies conserved protein hubs required for cadherin-mediated cell-cell adhesion
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
Whole-genome screening identifies proteins localized to distinct nuclear bodies
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
Rapid global fitting of large fluorescence lifetime imaging microscopy datasets
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
Global analysis of SUMO chain function reveals multiple roles in chromatin regulation
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
RNAi screening reveals a large signaling network controlling the Golgi apparatus in human cells
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
29 September 2017
Toward the virtual cell: automated approaches to building models of subcellular organization "learned" from microscopy images
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
29 September 2017
Biological imaging software tools
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
Annotated high-throughput microscopy image sets for validation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
OMERO.searcher: content-based image search for microscope images
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
Nucleoporin NUP153 guards genome integrity by promoting nuclear import of 53BP1
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
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29 September 2017
Bringing Rad52 foci into focus
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
29 September 2017
Phenotypic profiling of the human genome reveals gene products involved in plasma membrane targeting of SRC kinases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
29 September 2017
Open tools for storage and management of quantitative image data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
29 September 2017
To 5D and beyond: quantitative fluorescence microscopy in the postgenomic era.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
29 September 2017
Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
27 November 2018
Systems survey of endocytosis by multiparametric image analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4773399
retrieved
27 November 2018
Identifiers
DOI
10.1016/J.YMETH.2015.10.006
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1553941
OpenCitations bibliographic resource ID
1553941
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1553941
PMCID
4773399
0 references
PubMed ID
26476368
0 references
ResearchGate publication ID
282945330
0 references
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