(Q28607213)

2

object named as

Albert C Fahrenbach

0 references

author name string

Aaron T Larsen

1

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Jia Sheng

3

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Julia Pian

Creative Commons Attribution 4.0 International

4

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language of work or name

English

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publication date

18 September 2015

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published in

Nucleic Acids Research

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volume

43

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issue

16

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page(s)

7675-87

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copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Structural insights of non-canonical U*U pair and Hoogsteen interaction probed with Se atom

1 reference

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Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Human tRNALys3UUU Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto–Enol Tautomerism

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

The RNA Modification Database, RNAMDB: 2011 update

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Scalable molecular dynamics with NAMD

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Electrostatics of nanosystems: application to microtubules and the ribosome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Selforganization of matter and the evolution of biological macromolecules

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Replacing uridine with 2-thiouridine enhances the rate and fidelity of nonenzymatic RNA primer extension

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Crystal structure studies of RNA duplexes containing s(2)U:A and s(2)U:U base pairs

29 September 2017

1 reference

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Surprising base pairing and structural properties of 2'-trifluoromethylthio-modified ribonucleic acids

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

The free energy landscape of pseudorotation in 3'-5' and 2'-5' linked nucleic acids

29 September 2017

1 reference

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In-ice evolution of RNA polymerase ribozyme activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Activated ribonucleotides undergo a sugar pucker switch upon binding to a single-stranded RNA template

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Effect of stalling after mismatches on the error catastrophe in nonenzymatic nucleic acid replication

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Comparative enzymology and structural biology of RNA self-cleavage

29 September 2017

1 reference

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The structural and functional diversity of metabolite-binding riboswitches

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Riboswitch RNAs: using RNA to sense cellular metabolism

29 September 2017

1 reference

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Heat capacity changes associated with DNA duplex formation: salt- and sequence-dependent effects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Chemical primer extension: efficiently determining single nucleotides in DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Ribozyme catalysis: not different, just worse

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Decoding the genome: a modified view

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

The non-Watson-Crick base pairs and their associated isostericity matrices

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Preorganization of DNA: Design Principles for Improving Nucleic Acid Recognition by Synthetic Oligonucleotides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Thermodynamics of RNA-RNA duplexes with 2- or 4-thiouridines: implications for antisense design and targeting a group I intron.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Synthesis and studies on the effect of 2-thiouridine and 4-thiouridine on sugar conformation and RNA duplex stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Minor groove recognition of the conserved G.U pair at the Tetrahymena ribozyme reaction site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

29 September 2017

RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

A user-friendly Matlab program and GUI for the pseudorotation analysis of saturated five-membered ring systems based on scalar coupling constants.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4652770

Origin of life: The RNA world

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV761

Synthesis and properties of 2'-O-methyl-2-thiouridine and oligoribonucleotides containing 2'-O-methyl-2-thiouridine

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV761

Exact analysis of competition ligand binding by displacement isothermal titration calorimetry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV761

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV761

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV761

Octanol‐Water Partition Coefficients of Simple Organic Compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV761

Prediction of Physicochemical Parameters by Atomic Contributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV761

Energetics of hydrogen bond networks in RNA: hydrogen bonds surrounding G+1 and U42 are the major determinants for the tertiary structure stability of the hairpin ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV761

Geometric characteristics of hydrogen bonds involving sulfur atoms in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV761

Role of unsatisfied hydrogen bond acceptors in RNA energetics and specificity

21 January 2018

1 reference

12 December 2020

Molecular structure of poly-2-thiouridylic acid, a double helix with non-equivalent polynucleotide chains

1 reference

12 December 2020

Hydration of RNA base pairs

1 reference

12 December 2020

Furanose sugar conformations in DNA from NMR coupling constants

1 reference

12 December 2020

The question of long-range allosteric transitions in DNA

1 reference

12 December 2020

Constant pressure molecular dynamics simulation: The Langevin piston method

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKV761

Identifiers

DOI

10.1093/NAR/GKV761

1 reference

2225557

2225557

1 reference

1 reference

1 reference