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Swabs to genomes: a comprehensive workflow
scientific article
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instance of
scholarly article
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title
Swabs to genomes: a comprehensive workflow
(English)
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main subject
workflow
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inferred from title
author
Jonathan A. Eisen
series ordinal
5
object named as
Jonathan A Eisen
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David A. Coil
series ordinal
6
object named as
David A Coil
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Aaron Earl Darling
object named as
Aaron E Darling
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4
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author name string
Madison I Dunitz
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1
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Jenna M Lang
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2
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Guillaume Jospin
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3
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language of work or name
English
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publication date
2015
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published in
PeerJ
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stated in
Crossref
volume
3
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page(s)
e960
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describes a project that uses
MIRA
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MIRA
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CZ Software Mentions: A large dataset of software mentions in the biomedical literature
cites work
Defining bacterial species in the genomic era: insights from the genus Acinetobacter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
17 March 2017
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
17 March 2017
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
17 March 2017
Identifying bacterial genes and endosymbiont DNA with Glimmer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
17 March 2017
MUSCLE: multiple sequence alignment with high accuracy and high throughput
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
17 March 2017
Basic local alignment search tool
2 references
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
17 March 2017
stated in
Crossref
reference URL
https://api.crossref.org/works/10.7717%2FPEERJ.960
retrieved
22 April 2017
DNA sequencing with chain-terminating inhibitors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
17 March 2017
Prokka: rapid prokaryotic genome annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
7 April 2017
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
7 April 2017
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
2 references
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
7 April 2017
stated in
Crossref
reference URL
https://api.crossref.org/works/10.7717%2FPEERJ.960
retrieved
21 January 2018
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
7 April 2017
Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
9 May 2017
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
PhyloSift: phylogenetic analysis of genomes and metagenomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Ribosomal Database Project: data and tools for high throughput rRNA analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
IMG 4 version of the integrated microbial genomes comparative analysis system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Draft Genome Sequence of Leucobacter sp. Strain UCD-THU (Phylum Actinobacteria).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobacteria).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
GAGE-B: an evaluation of genome assemblers for bacterial organisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Beginner's guide to comparative bacterial genome analysis using next-generation sequence data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Draft genome sequence of an Actinobacterium, Brachybacterium muris strain UCD-AY4.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
An integrated pipeline for de novo assembly of microbial genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
SeqTrace: a graphical tool for rapidly processing DNA sequencing chromatograms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
GAGE: A critical evaluation of genome assemblies and assembly algorithms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Assemblathon 1: a competitive assessment of de novo short read assembly methods
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Efficient construction of an assembly string graph using the FM-index
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
A computational genomics pipeline for prokaryotic sequencing projects
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Sequences, sequence clusters and bacterial species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Sequence-based identification of new bacteria: a proposition for creation of an orphan bacterium repository
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4435499
retrieved
3 June 2018
Phylogeny for the faint of heart: a tutorial.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.7717%2FPEERJ.960
retrieved
21 January 2018
Identifiers
DOI
10.7717/PEERJ.960
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3615108
OpenCitations bibliographic resource ID
3615108
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3615108
PMC publication ID
4435499
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3615108
PubMed publication ID
26020012
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3615108
ResearchGate publication ID
277409677
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