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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes

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4 March 2020

A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes (English)

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4 March 2020

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Donovan H Parks

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4 March 2020

Philip Hugenholtz

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4 March 2020

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Falk Warnecke

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4 March 2020

Shana K. Goffredi

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4 March 2020

Rudolf H. Scheffrahn

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4 March 2020

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Nurdyana Abdul Rahman

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4 March 2020

Dana L Willner

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4 March 2020

Anna L Engelbrektson

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4 March 2020

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4 March 2020

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4 March 2020

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4 March 2020

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4 March 2020

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25 February 2015

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A taxonomic index, with names of descriptive authorities of termite genera and species: an accompaniment to Biology of Termites: A Modern Synthesis (Bignell DE, Roisin Y, Lo N, Editors. 2011. Springer, Dordrecht. 576 pp.)

1 reference

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17 March 2017

The cockroach origin of the termite gut microbiota: patterns in bacterial community structure reflect major evolutionary events

1 reference

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17 March 2017

Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

17 March 2017

Evolutionary relationships of wild hominids recapitulated by gut microbial communities

1 reference

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17 March 2017

QIIME allows analysis of high-throughput community sequencing data

1 reference

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17 March 2017

Worlds within worlds: evolution of the vertebrate gut microbiota

1 reference

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17 March 2017

Evolution of mammals and their gut microbes

1 reference

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17 March 2017

"Endomicrobia": cytoplasmic symbionts of termite gut protozoa form a separate phylum of prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

17 March 2017

Molecular phylogeny of Asian termites (Isoptera) of the families Termitidae and Rhinotermitidae based on mitochondrial COII sequences

1 reference

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17 March 2017

The process of genome shrinkage in the obligate symbiont Buchnera aphidicola

1 reference

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17 March 2017

Basic local alignment search tool

1 reference

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17 March 2017

UCHIME improves sensitivity and speed of chimera detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

7 April 2017

UniFrac: a new phylogenetic method for comparing microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

7 April 2017

ARB: a software environment for sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

7 April 2017

CD-HIT: accelerated for clustering the next-generation sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

7 April 2017

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

7 April 2017

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

7 April 2017

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

7 April 2017

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

7 April 2017

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

7 April 2017

Host-specific assemblages typify gut microbial communities of related insect species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Who digests the lignocellulose?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Optimal eukaryotic 18S and universal 16S/18S ribosomal RNA primers and their application in a study of symbiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Characterization of the 18S rRNA gene for designing universal eukaryote specific primers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Symbiotic digestion of lignocellulose in termite guts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Localizing transcripts to single cells suggests an important role of uncultured deltaproteobacteria in the termite gut hydrogen economy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

The gut microbiota of insects - diversity in structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Biodiversity and molecular phylogeny of Australian Clevelandella species (Class Armophorea, Order Clevelandellida, Family Clevelandellidae), intestinal endosymbiotic ciliates in the wood-feeding roach Panesthia cribrata Saussure, 1864.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Variations in diversity and richness of gut bacterial communities of termites (Reticulitermes flavipes) fed with grassy and woody plant substrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Morphology and molecular phylogeny of Staurojoenina mulleri sp. nov. (Trichonymphida, Parabasalia) from the hindgut of the kalotermitid Neotermes jouteli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Effects of OTU clustering and PCR artifacts on microbial diversity estimates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

"Methanoplasmatales," Thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

The bacterial community in the gut of the Cockroach Shelfordella lateralis reflects the close evolutionary relatedness of cockroaches and termites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Lessons from studying insect symbioses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Toward the functional analysis of uncultivable, symbiotic microorganisms in the termite gut.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

UniFrac: an effective distance metric for microbial community comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Diversity and genomes of uncultured microbial symbionts in the termite gut.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Metagenomic sequencing of an in vitro-simulated microbial community

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Symbiosis in subterranean termites: a review of insights from molecular studies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Identifying biologically relevant differences between metagenomic communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

The taxophysiological paradox: changes in the intestinal microbiota of the xylophagous cockroach Cryptocercus punctulatus depending on the physiological state of the host

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

The effects of fossil placement and calibration on divergence times and rates: an example from the termites (Insecta: Isoptera).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

The phylogeny of termites (Dictyoptera: Isoptera) based on mitochondrial and nuclear markers: Implications for the evolution of the worker and pseudergate castes, and foraging behaviors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Building on basic metagenomics with complementary technologies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

A comprehensive phylogenetic analysis of termites (Isoptera) illuminates key aspects of their evolutionary biology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Cospeciation in the triplex symbiosis of termite gut protists (Pseudotrichonympha spp.), their hosts, and their bacterial endosymbionts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

The candidate phylum 'Termite Group 1' of bacteria: phylogenetic diversity, distribution, and endosymbiont members of various gut flagellated protists

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Endosymbiotic Bacteroidales bacteria of the flagellated protist Pseudotrichonympha grassii in the gut of the termite Coptotermes formosanus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Intra- and interspecific comparisons of bacterial diversity and community structure support coevolution of gut microbiota and termite host

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Molecular phylogenetic diversity of the bacterial community in the gut of the termite Coptotermes formosanus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Phylogenetic diversity of nitrogen fixation genes in the symbiotic microbial community in the gut of diverse termites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Localization and in situ activities of homoacetogenic bacteria in the highly compartmentalized hindgut of soil-feeding higher termites (Cubitermes spp.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

Evolution of the mitochondrial cytochrome oxidase II gene among 10 orders of insects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

3 June 2018

New termite species and newly recorded genus for Australia:Marginitermes absitus(Isoptera: Kalotermitidae)

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Extremely high copy numbers and polymorphisms of the rDNA operon estimated from single cell analysis of oligotrich and peritrich ciliates.

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Putatively free-living 'Endomicrobia'- ancestors of the intracellular symbionts of termite gut flagellates?

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Phylogenetic and morphological diversity of Bacteroidales members associated with the gut wall of termites.

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Niche heterogeneity determines bacterial community structure in the termite gut (Reticulitermes santonensis).

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Identification and characterization of ectosymbionts of distinct lineages in Bacteroidales attached to flagellated protists in the gut of termites and a wood-feeding cockroach.

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut.

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Symbionts of the gut flagellate Staurojoenina sp. from Neotermes cubanus represent a novel, termite-associated lineage of Bacteroidales: description of 'Candidatus Vestibaculum illigatum'.

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Phylogenetic diversity of 'Endomicrobia' and their specific affiliation with termite gut flagellates

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Divergence times in the termite genus Macrotermes (Isoptera: Termitidae).

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Molecular phylogenetic profiling of prokaryotic communities in guts of termites with different feeding habits

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Protist Communities from Four Castes and Three Species of Reticulitermes (Isoptera: Rhinotermitidae)

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Termites: Evolution, Sociality, Symbioses, Ecology

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Impaired leaf litter processing in acidified streams : learning from microbial enzyme activities.

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

The hindgut lumen prokaryotic microbiota of the termite Reticulitermes flavipes and its responses to dietary lignocellulose composition.

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Fast, accurate error-correction of amplicon pyrosequences using Acacia

1 reference

https://api.crossref.org/works/10.1186%2FS40168-015-0067-8

21 January 2018

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

27 November 2018

Phylogeny of Wolbachia in filarial nematodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4379614

27 November 2018

Novel lineages of Planctomycetes densely colonize the alkaline gut of soil-feeding termites (Cubitermes spp.).

1 reference

https://pubmed.ncbi.nlm.nih.gov/25830022

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic relationships of symbiotic spirochetes in the gut of diverse termites

1 reference

https://pubmed.ncbi.nlm.nih.gov/25830022

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular analysis of bacterial microbiota in the gut of the termite Reticulitermes speratus (Isoptera; Rhinotermitidae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/25830022

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular phylogeny of methanogens associated with flagellated protists in the gut and with the gut epithelium of termites

1 reference

https://pubmed.ncbi.nlm.nih.gov/25830022

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S40168-015-0067-8

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25830022%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s40168-015-0067-8

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25830022%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

PubMed publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25830022%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

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