(Q28652792)

Clonostachys rosea

1 reference

10

0 references

Bernard Henrissat

22

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Jinhui Wang

Jinhui Wang

12

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Daniel Buchvaldt Amby

Daniel Buchvaldt Amby

13

0 references

Dan Funck Jensen

Dan Funck Jensen

24

0 references

Giovanni Vannacci

Giovanni Vannacci

19

0 references

Birgit Jensen

Birgit Jensen

14

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Magnus Karlsson

Magnus Karlsson

1

0 references

Stefanie Pöggeler

18

Stefanie Pöggeler

0 references

author name string

Mikael Brandström Durling

2

0 references

Jaeyoung Choi

3

0 references

Chatchai Kosawang

4

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Gerald Lackner

5

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Georgios D Tzelepis

6

0 references

Kristiina Nygren

7

0 references

Mukesh K Dubey

8

0 references

Nathalie Kamou

9

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Antonio Zapparata

11

0 references

Sabrina Sarrocco

15

0 references

Emmanuel Panteris

16

0 references

Anastasia L Lagopodi

17

0 references

David B Collinge

20

0 references

Dirk Hoffmeister

21

0 references

Yong-Hwan Lee

Genome Biology and Evolution

23

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language of work or name

English

0 references

publication date

8 January 2015

0 references

published in

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volume

7

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issue

2

0 references

page(s)

465-80

0 references

cites work

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture-insights from genomics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) proposed for acceptance or rejection

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Full-length transcriptome assembly from RNA-Seq data without a reference genome

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Food security: the challenge of feeding 9 billion people

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Phylogenetic classification of Cordyceps and the clavicipitaceous fungi

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Clustal W and Clustal X version 2.0

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

PAML 4: phylogenetic analysis by maximum likelihood

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Reconstructing the early evolution of Fungi using a six-gene phylogeny

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Perithecial ascomycetes from the 400 million year old Rhynie chert: an example of ancestral polymorphism

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Gene finding in novel genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

The pleitropic drug ABC transporters from Saccharomyces cerevisiae.

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Gene ontology: tool for the unification of biology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

PAML: a program package for phylogenetic analysis by maximum likelihood

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

The rapid generation of mutation data matrices from protein sequences

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

ABySS: a parallel assembler for short read sequence data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

The carbohydrate-active enzymes database (CAZy) in 2013

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Comparative genomics provide insights into evolution of trichoderma nutrition style

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

The polyketide synthase gene pks4 of Trichoderma reesei provides pigmentation and stress resistance.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Trichoderma research in the genome era.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Plant-beneficial effects of Trichoderma and of its genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Trichoderma: the genomics of opportunistic success

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Expression of biomass-degrading enzymes is a major event during conidium development in Trichoderma reesei

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Jackknife and bootstrap tests of the composition vector trees

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Translational research on Trichoderma: from 'omics to the field.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Comparative molecular evolution of trichoderma chitinases in response to mycoparasitic interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Phylogenetic analysis of fungal ABC transporters.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Fungi evolved right on track

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Three endochitinase-encoding genes identified in the biocontrol fungus Clonostachys rosea are differentially expressed.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Cloning and expression analysis of a chitinase gene Crchi1 from the mycoparasitic fungus Clonostachys rosea (syn. Gliocladium roseum).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

A complete survey of Trichoderma chitinases reveals three distinct subgroups of family 18 chitinases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Interactions in the tomato rhizosphere of two Pseudomonas biocontrol strains with the phytopathogenic fungus Fusarium oxysporum f. sp. radicis-lycopersici

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Novel aspects of tomato root colonization and infection by Fusarium oxysporum f. sp. radicis-lycopersici revealed by confocal laser scanning microscopic analysis using the green fluorescent protein as a marker

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Argadin, a new chitinase inhibitor, produced by Clonostachys sp. FO-7314.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4350171

Nematicidal epipolysulfanyldioxopiperazines from Gliocladium roseum

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU292

An ATP-binding cassette pleiotropic drug transporter protein is required for xenobiotic tolerance and antagonism in the fungal biocontrol agent Clonostachys rosea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU292

Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU292

Structure and evolution of the Fusarium mating type locus: New insights from the Gibberella fujikuroi complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU292

Identification of a new biocontrol gene in Trichoderma atroviride: the role of an ABC transporter membrane pump in the interaction with different plant-pathogenic fungi.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU292

Classification of the Mycoparasite Gliocladium roseum in Clonostachys as C. rosea, Its Relationship to Bionectria ochroleuca, and Notes on Other Gliocladium-like Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU292

A multidrug resistance transporter in Magnaporthe is required for host penetration and for survival during oxidative stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU292

Functional analysis of glycoside hydrolase family 18 and 20 genes in Neurospora crassa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU292

Clonostachys rosea BAFC3874 as a Sclerotinia sclerotiorum antagonist: mechanisms involved and potential as a biocontrol agent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU292

Gnotobiotic system for studying rhizosphere colonization by plant growth-promoting Pseudomonas bacteria

21 January 2018

1 reference

12 December 2020

A survey of nonribosomal peptide synthetase (NRPS) genes in Aspergillus nidulans

1 reference

12 December 2020

Glisoprenins C, D and E, new inhibitors of appressorium formation in Magnaporthe grisea, from cultures of Gliocladium roseum. 1. Production and biological activities

1 reference

12 December 2020

Secondary metabolism in Trichoderma--a genomic perspective

1 reference

12 December 2020

Gliocladins A - C and Glioperazine ; Cytotoxic Dioxo- or Trioxopiperazine Metabolites from a Gliocladium Sp. Separated from a Sea Hare

1 reference

12 April 2024

https://opencitations.net/index/api/v1/citations/10.3987/COM-04-10037

Identifiers

DOI

10.1093/GBE/EVU292

1 reference

1 reference

1 reference

PubMed publication ID

25575496

1 reference