(Q28652843)

Thomas Gonatopoulos-Pournatzis

6

0 references

Babak Alipanahi

Babak Alipanahi

5

0 references

Nuno L Barbosa-Morais

Nuno L Barbosa-Morais

2

0 references

Manuel Irimia

Manuel Irimia

8

0 references

Benjamin J. Blencowe

9

Benjamin J Blencowe

0 references

Brendan J. Frey

7

Brendan Frey

0 references

author name string

Qun Pan

3

0 references

Emil N Nachman

describes a project that uses

4

0 references

language of work or name

English

0 references

publication date

November 2014

0 references

published in

Genome Research

0 references

volume

24

0 references

issue

11

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page(s)

1774-86

0 references

ImageJ

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4216919/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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Stimulatory effect of splicing factors on transcriptional elongation

17 March 2017

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17 March 2017

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

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Expansion of the eukaryotic proteome by alternative splicing

7 April 2017

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Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase

7 April 2017

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The evolution of gene expression levels in mammalian organs

7 April 2017

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Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications

7 April 2017

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A splicing-dependent transcriptional checkpoint associated with prespliceosome formation.

20 June 2018

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Regulated aggregative multicellularity in a close unicellular relative of metazoa

20 June 2018

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Longitudinal RNA sequencing of the deep transcriptome during neurogenesis of cortical glutamatergic neurons from murine ESCs.

20 June 2018

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The functional consequences of intron retention: alternative splicing coupled to NMD as a regulator of gene expression

20 June 2018

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Alternative splicing: a pivotal step between eukaryotic transcription and translation

20 June 2018

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Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.

20 June 2018

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A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals

20 June 2018

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Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention

20 June 2018

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Alternative splicing: decoding an expansive regulatory layer

20 June 2018

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Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

20 June 2018

1 reference

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The RNA polymerase C-terminal domain: a new role in spliceosome assembly

20 June 2018

1 reference

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Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

20 June 2018

1 reference

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20 June 2018

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Expression of FACT in mammalian tissues suggests its role in maintaining of undifferentiated state of cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Functional consequences of developmentally regulated alternative splicing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Regulation of alternative splicing by the core spliceosomal machinery

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Splicing-dependent RNA polymerase pausing in yeast

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Smg1 is required for embryogenesis and regulates diverse genes via alternative splicing coupled to nonsense-mediated mRNA decay

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Biased chromatin signatures around polyadenylation sites and exons

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Sequence features responsible for intron retention in human

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

An intron with a constitutive transport element is retained in a Tap messenger RNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216919

Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition

20 June 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

Detection and evaluation of intron retention events in the human transcriptome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

Intron retention is a major phenomenon in alternative splicing in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

Chromatin organization marks exon-intron structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

Nucleosome positioning as a determinant of exon recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

Orchestrated intron retention regulates normal granulocyte differentiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

The evolutionary landscape of alternative splicing in vertebrate species

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

Origin of introns by ‘intronization’ of exonic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177790.114

21 January 2018

Identifiers

DOI

10.1101/GR.177790.114

1 reference

447870

447870

1 reference

1 reference

1 reference