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Prospects for riboswitch discovery and analysis
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scholarly article
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stated in
Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
review article
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stated in
Europe PubMed Central
title
Prospects for riboswitch discovery and analysis
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
main subject
cell biology
0 references
author
Ronald Breaker
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
author name string
Ronald R Breaker
series ordinal
1
0 references
language of work or name
English
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publication date
1 September 2011
1 reference
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Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
published in
Molecular Cell
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stated in
Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
volume
43
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Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
issue
6
1 reference
stated in
Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
page(s)
867-879
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stated in
Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
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17 March 2017
Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria
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New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
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17 March 2017
Control of gene expression by a natural metabolite-responsive ribozyme
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17 March 2017
Adenine riboswitches and gene activation by disruption of a transcription terminator
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Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5'-UTR
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An mRNA structure in bacteria that controls gene expression by binding lysine
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The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes
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17 March 2017
An mRNA structure that controls gene expression by binding S-adenosylmethionine
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17 March 2017
Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
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17 March 2017
Metabolite-binding RNA domains are present in the genes of eukaryotes
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17 March 2017
The riboswitch-mediated control of sulfur metabolism in bacteria
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17 March 2017
Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria
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17 March 2017
An mRNA structure that controls gene expression by binding FMN
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17 March 2017
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
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17 March 2017
Genetic control by a metabolite binding mRNA
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17 March 2017
Do mRNAs act as direct sensors of small molecules to control their expression?
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17 March 2017
A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria
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17 March 2017
Adenosylcobalamin inhibits ribosome binding to btuB RNA
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17 March 2017
A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes
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17 March 2017
From oligonucleotide shapes to genomic SELEX: novel biological regulatory loops
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17 March 2017
Riboswitches in eubacteria sense the second messenger cyclic di-GMP
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Riboswitches: discovery of drugs that target bacterial gene-regulatory RNAs
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The riboflavin analog roseoflavin targets an FMN-riboswitch and blocks Listeria monocytogenes growth, but also stimulates virulence gene-expression and infection
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An allosteric self-splicing ribozyme triggered by a bacterial second messenger
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Determination of riboswitch structures: light at the end of the tunnel?
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Design and antimicrobial action of purine analogues that bind Guanine riboswitches
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3 June 2018
Riboswitches: from ancient gene-control systems to modern drug targets
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3 June 2018
Mechanism-guided library design and dual genetic selection of synthetic OFF riboswitches
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3 June 2018
A switch in time: detailing the life of a riboswitch
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3 June 2018
Microbial thermosensors.
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3 June 2018
The long and the short of riboswitches.
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3 June 2018
The structural and functional diversity of metabolite-binding riboswitches
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3 June 2018
Expanding roles for metabolite-sensing regulatory RNAs
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3 June 2018
Roseoflavin is a natural antibacterial compound that binds to FMN riboswitches and regulates gene expression
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3 June 2018
Riboswitches: emerging themes in RNA structure and function
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
3 June 2018
Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
3 June 2018
Mechanisms of resistance to an amino acid antibiotic that targets translation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Thiamine biosynthesis in algae is regulated by riboswitches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Purine sensing by riboswitches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Riboswitches: small-molecule recognition by gene regulatory RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Control of alternative RNA splicing and gene expression by eukaryotic riboswitches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Mix-and-match riboswitches.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Riboswitches as antibacterial drug targets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Development and application of a high-throughput assay for glmS riboswitch activators
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Mechanisms of cyclic-di-GMP signaling in bacteria
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
3 June 2018
Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
3 June 2018
Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Sensing Small Molecules by Nascent RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Engineered allosteric ribozymes as biosensor components
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Nucleic acid molecular switches
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
The mechanism of intrinsic transcription termination.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
SELEX and the evolution of genomes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Novel form of transcription attenuation regulates expression the Bacillus subtilis tryptophan operon
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
The rise and fall of the RNA world
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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3 June 2018
Letter: Roseoflavin, a new antimicrobial pigment from Streptomyces.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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20 June 2018
A synthetic riboswitch with chemical band-pass response
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
27 November 2018
The RFN riboswitch of Bacillus subtilis is a target for the antibiotic roseoflavin produced by Streptomyces davawensis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
27 November 2018
Artificial ribozyme switches containing natural riboswitch aptamer domains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
27 November 2018
Tandem riboswitch architectures exhibit complex gene control functions.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
27 November 2018
High-throughput-compatible assay for glmS riboswitch metabolite dependence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
27 November 2018
Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
27 November 2018
Ligand requirements for glmS ribozyme self-cleavage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
27 November 2018
The kinetics of ligand binding by an adenine-sensing riboswitch
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
retrieved
27 November 2018
The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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27 November 2018
Catalytic roles for proton transfer and protonation in ribozymes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4140403
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27 November 2018
The dynamic nature of RNA as key to understanding riboswitch mechanisms
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21925376
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Analysis of the transcriptional activity of the hut promoter in Bacillus subtilis and identification of a cis-acting regulatory region associated with catabolite repression downstream from the site of transcription
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21925376
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
tRNA as a positive regulator of transcription antitermination in B. subtilis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21925376
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mechanism of intrinsic transcription termination and antitermination
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21925376
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Origin of life: The RNA world
1 reference
stated in
COCI
retrieved
4 November 2023
reference URL
https://opencitations.net/index/coci/api/v1/citations/10.1038/319618A0
ROSEOFLAVIN, A NEW ANTIMICROBIAL PIGMENT FROM STREPTOMYCES
1 reference
stated in
COCI
retrieved
12 April 2024
reference URL
https://opencitations.net/index/api/v1/citations/10.7164/ANTIBIOTICS.27.88
Identifiers
DOI
10.1016/J.MOLCEL.2011.08.024
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
229311
stated in
Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
OpenCitations bibliographic resource ID
229311
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
229311
PMC publication ID
4140403
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
229311
stated in
Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
PubMed publication ID
21925376
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
229311
stated in
Europe PubMed Central
PMC publication ID
4140403
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21925376%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
ResearchGate publication ID
51649804
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