(Q28658229)

English

The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models

scientific article (publication date: March 2014)

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scholarly article

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The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models (English)

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HIV transmission

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1 reference

based on heuristic

inferred from title

21

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Oliver Laeyendecker

5

object named as

Oliver Laeyendecker

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object named as

Justin Lessler

2

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object named as

Stuart C Ray

13

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20

object named as

Fred Nalugoda

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object named as

Maria J Wawer

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24

object named as

Ronald H Gray

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14

object named as

Tom Lutalo

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Thomas C. Quinn

23

object named as

Thomas C Quinn

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8

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Derek A T Cummings

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18

object named as

Chris Beyrer

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Steven J. Reynolds

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object named as

Steven J Reynolds

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4

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Joseph Kagaayi

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Mary Kathryn Grabowski

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object named as

Mary K Grabowski

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Anthony Ndyanabo

6

object named as

Anthony Ndyanabo

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10

object named as

Amy C Mueller

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Supriya Munshaw

12

object named as

Supriya Munshaw

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15

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Jordyn Manucci

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Aaron A R Tobian

16

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Aaron A R Tobian

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author name string

Andrew D Redd

3

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Martha I Nelson

7

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John Baptiste Bwanika

9

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Larry W Chang

17

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Jacky M Jennings

19

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language of work or name

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publication date

March 2014

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11

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3

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e1001610

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copyright license

Creative Commons Attribution 4.0 International

4 March 2014

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April 2022 Public Data File from Crossref

copyright status

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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

17 March 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

17 March 2017

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

17 March 2017

RDP3: a flexible and fast computer program for analyzing recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

7 April 2017

Extra-couple HIV transmission in sub-Saharan Africa: a mathematical modelling study of survey data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Revealing the microscale spatial signature of dengue transmission and immunity in an urban population

1 reference

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3 June 2018

Treatment as prevention: translating efficacy trial results to population effectiveness

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Analysis of genetic linkage of HIV from couples enrolled in the HIV Prevention Trials Network 052 trial

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Effect of concurrent sexual partnerships on rate of new HIV infections in a high-prevalence, rural South African population: a cohort study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

HIV-1 transmission among HIV-1 discordant couples before and after the introduction of antiretroviral therapy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Changes in the distribution of HIV type 1 subtypes D and A in Rakai District, Uganda between 1994 and 2002.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Decreases in community viral load are accompanied by reductions in new HIV infections in San Francisco

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Geographic HIV type 1 subtype distribution in Rakai district, Uganda

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

The consequences of spatial structure for the evolution of pathogen transmission rate and virulence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

jpHMM: improving the reliability of recombination prediction in HIV-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

HIV-1 transmission, by stage of infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

New heterosexually transmitted HIV infections in married or cohabiting couples in urban Zambia and Rwanda: an analysis of survey and clinical data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Rates of HIV-1 transmission per coital act, by stage of HIV-1 infection, in Rakai, Uganda

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Determinants and consequences of sexual networks as they affect the spread of sexually transmitted infections

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Design and analysis issues in cluster-randomized trials of interventions against infectious diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Control of sexually transmitted diseases for HIV-1 prevention: understanding the implications of the Mwanza and Rakai trials

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Control of sexually transmitted diseases for AIDS prevention in Uganda: a randomised community trial. Rakai Project Study Group

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Geographic epidemiology of gonorrhea in Baltimore, Maryland, using a geographic information system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Molecular epidemiological analysis of HIV in sexual networks in Uganda.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Seasonal migration: a risk factor for HIV infection in rural Senegal.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Migration and HIV-1 seroprevalence in a rural Ugandan population.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Slim disease: a new disease in Uganda and its association with HTLV-III infection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

The spread of HIV-1 in Africa: sexual contact patterns and the predicted demographic impact of AIDS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3942316

3 June 2018

Spatial heterogeneity and the persistence of infectious diseases

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PMED.1001610

21 January 2018

Disease evolution on networks: the role of contact structure

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PMED.1001610

21 January 2018

Dynamics of the 2001 UK Foot and Mouth Epidemic: Stochastic Dispersal in a Heterogeneous Landscape

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PMED.1001610

21 January 2018

Universal voluntary HIV testing and immediate antiretroviral therapy

1 reference

https://pubmed.ncbi.nlm.nih.gov/24595023

12 December 2020

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inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PMED.1001610

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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