(Q28658673)

12

object named as

Eugene Kolker

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author name string

Elizabeth Montague

1

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Roger Higdon

3

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Imre Janko

4

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Elaine Lee

5

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Nathaniel Anderson

6

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John Choiniere

7

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Elizabeth Stewart

8

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Gregory Yandl

9

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William Broomall

10

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Natali Kolker

OMICS A Journal of Integrative Biology

11

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language of work or name

English

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publication date

June 2014

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published in

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volume

18

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issue

6

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page(s)

335-43

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cites work

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17 March 2017

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The Reactome pathway knowledgebase

17 March 2017

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Data, information, knowledge and principle: back to metabolism in KEGG

17 March 2017

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The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

17 March 2017

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PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

17 March 2017

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17 March 2017

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NCBI GEO: archive for functional genomics data sets--update

17 March 2017

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Genenames.org: the HGNC resources in 2013

17 March 2017

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Proteomics and systems biology for understanding diabetic nephropathy

17 March 2017

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Towards an Ecology of Collective Innovation: Human Variome Project (HVP), Rare Disease Consortium for Autosomal Loci (RaDiCAL) and Data-Enabled Life Sciences Alliance (DELSA)

17 March 2017

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In-silico human genomics with GeneCards

17 March 2017

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MOPED: Model Organism Protein Expression Database

17 March 2017

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

17 March 2017

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17 March 2017

The PeptideAtlas project

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Database resources of the National Center for Biotechnology Information

17 March 2017

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

17 March 2017

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Entrez Gene: gene-centered information at NCBI

17 March 2017

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Open mass spectrometry search algorithm

17 March 2017

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Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

17 March 2017

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Gene ontology: tool for the unification of biology

17 March 2017

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17 March 2017

The Protein Data Bank

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KEGG: kyoto encyclopedia of genes and genomes

17 March 2017

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Personal omics profiling reveals dynamic molecular and medical phenotypes

17 March 2017

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Ten years of pathway analysis: current approaches and outstanding challenges

7 April 2017

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Saccharomyces Genome Database: the genomics resource of budding yeast

7 April 2017

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TANDEM: matching proteins with tandem mass spectra

7 April 2017

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Activities at the Universal Protein Resource (UniProt)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

JOINT ANALYSIS OF SNP AND GENE EXPRESSION DATA IN GENETIC ASSOCIATION STUDIES OF COMPLEX DISEASES.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Integrative modeling of multiple genomic data from different types of genetic association studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Integration of gene expression data with network-based analysis to identify signaling and metabolic pathways regulated during the development of osteoarthritis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Greatwall-phosphorylated Endosulfine is both an inhibitor and a substrate of PP2A-B55 heterotrimers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

5β-Reduced steroids and human Δ(4)-3-ketosteroid 5β-reductase (AKR1D1).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

MOPED enables discoveries through consistently processed proteomics data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

RefSeq: an update on mammalian reference sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Annotating cancer variants and anti-cancer therapeutics in reactome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Whole genome methylation array analysis reveals new aspects in Balkan endemic nephropathy etiology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

iPOP goes the world: integrated personalized Omics profiling and the road toward improved health care

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Differential expression analysis for pathways

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

PaxDb, a database of protein abundance averages across all three domains of life

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Targeted proteomics of the eicosanoid biosynthetic pathway completes an integrated genomics-proteomics-metabolomics picture of cellular metabolism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Improving validation practices in "omics" research

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

WormBase 2012: more genomes, more data, new website

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

SPIRE: Systematic protein investigative research environment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Policy and data-intensive scientific discovery in the beginning of the 21st century

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Bioinformatics and data-intensive scientific discovery in the beginning of the 21st century

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

The Mouse Genome Database (MGD): mouse biology and model systems

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

GeneCards: integrating information about genes, proteins and diseases.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Reproducibility: In praise of open research measures

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

Exploratory analysis of multiple omics datasets using the adjusted RV coefficient

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048574

A note on the false discovery rate and inconsistent comparisons between experiments

27 November 2018

1 reference

12 December 2020

Estimating false discovery rates for peptide and protein identification using randomized databases

1 reference

12 December 2020

IPM: An integrated protein model for false discovery rate estimation and identification in high-throughput proteomics

1 reference

12 December 2020

Unraveling the Complexities of Life Sciences Data

1 reference

12 December 2020

Identifiers

DOI

10.1089/OMI.2014.0061

1 reference

1 reference

1 reference

PubMed publication ID

24910945

1 reference