(Q28660089)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

alternative mRNA splicing, via spliceosome

28 February 2020

main subject

Arabidopsis thaliana

0 references

1 reference

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

Zofia Szweykowska-Kulinska

28 February 2020

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Katarzyna D Raczynska

1

object named as

Katarzyna Dorota Raczynska

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

10

Artur Jarmolowski

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Craig G Simpson

7

0 references

Jim McNicol

6

object named as

Jim McNicol

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

3

Daniel Kierzkowski

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

4

Malgorzata Kalak

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

author name string

Agata Stepien

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

John W S Brown

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

language of work or name

English

0 references

publication date

16 October 2013

1 reference

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28 February 2020

published in

Nucleic Acids Research

1 reference

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28 February 2020

volume

42

1 reference

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28 February 2020

issue

2

1 reference

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28 February 2020

page(s)

1224-1244

1 reference

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Creative Commons Attribution 3.0 Unported

28 February 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Molecular insights into miRNA processing by Arabidopsis thaliana SERRATE

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Structure of Arabidopsis HYPONASTIC LEAVES1 and Its Molecular Implications for miRNA Processing

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Ars2 links the nuclear cap-binding complex to RNA interference and cell proliferation

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Alternative isoform regulation in human tissue transcriptomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Autoinhibition of human dicer by its internal helicase domain

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Mechanisms of alternative pre-messenger RNA splicing

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

DICER-LIKE1: blind men and elephants in Arabidopsis development

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Alternative splicing: increasing diversity in the proteomic world

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Alternative splicing in plants--coming of age.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Non-Canonical Processing of Arabidopsis pri-miR319a/b/c Generates Additional microRNAs to Target One RAP2.12 mRNA Isoform.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

SERRATE is required for intron suppression of RNA silencing in Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Intron splicing suppresses RNA silencing in Arabidopsis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Cap-binding protein complex links pre-mRNA capping to transcription elongation and alternative splicing through positive transcription elongation factor b (P-TEFb)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Regulation of alternative splicing by histone modifications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Ars2 regulates both miRNA- and siRNA- dependent silencing and suppresses RNA virus infection in Drosophila

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

A dominant mutation in DCL1 suppresses the hyl1 mutant phenotype by promoting the processing of miRNA

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Genome-wide analyses of alternative splicing in plants: opportunities and challenges.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Alternative splicing in plants.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Alternative splicing of pre-messenger RNAs in plants in the genomic era.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

SERRATE: a new player on the plant microRNA scene.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Arabidopsis endogenous small RNAs: highways and byways

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Alternative splicing: new insights from global analyses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Genomewide comparative analysis of alternative splicing in plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

SERRATE coordinates shoot meristem function and leaf axial patterning in Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Function of alternative splicing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

A mutation in the Cap Binding Protein 20 gene confers drought tolerance to Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Ectopic expression of atRSZ33 reveals its function in splicing and causes pleiotropic changes in development.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

An mRNA cap binding protein, ABH1, modulates early abscisic acid signal transduction in Arabidopsis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Intron retention is a major phenomenon in alternative splicing in Arabidopsis.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Identification of an intronic splicing regulatory element involved in auto-regulation of alternative splicing of SCL33 pre-mRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

A link between RNA metabolism and silencing affecting Arabidopsis development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

pSAT vectors: a modular series of plasmids for autofluorescent protein tagging and expression of multiple genes in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Subcellular localization of interacting proteins by bimolecular fluorescence complementation in planta.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Localization, ion channel regulation, and genetic interactions during abscisic acid signaling of the nuclear mRNA cap-binding protein, ABH1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT894

The Arabidopsis CBP20 targets the cap-binding complex to the nucleus, and is stabilized by CBP80.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902902

Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts

27 November 2018

1 reference

12 December 2020

The use of protoplasts to study innate immune responses

1 reference

12 December 2020

The arabidopsis serrate gene encodes a zinc-finger protein required for normal shoot development

1 reference

12 December 2020

A set of modular plant transformation vectors allowing flexible insertion of up to six expression units

1 reference

12 December 2020

Stress-induced alternative splicing provides a mechanism for the regulation of microRNA processing in Arabidopsis thaliana

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKT894

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

24137006

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24137006%20AND%20SRC:MED&resulttype=core&format=json