(Q28687624)

English

A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment

scientific article (publication date: 28 July 2012)

In more languages

default for all languages

No label defined

No description defined

Statements

scholarly article

0 references

A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment (English)

0 references

0 references

convergent evolution

0 references

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Todd Hampton Oakley

object named as

Todd H Oakley

4

0 references

author name string

Annie R Lindgren

1

0 references

Molly S Pankey

2

0 references

Frederick G Hochberg

3

0 references

language of work or name

0 references

publication date

28 July 2012

0 references

BMC Evolutionary Biology

0 references

12

0 references

1

0 references

129

0 references

The genomic basis of adaptive evolution in threespine sticklebacks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

Parallel evolution controlled by adaptation and covariation in ammonoid cephalopods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

Defensive tool use in a coconut-carrying octopus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

The origin and initial rise of pelagic cephalopods in the Ordovician

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

The genetic architecture of skeletal convergence and sex determination in ninespine sticklebacks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

Genome-scale phylogeny and the detection of systematic biases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

Enigma of the abundant water-soluble cytoplasmic proteins of the cornea: the "refracton" hypothesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

Dynamic mimicry in an Indo-Malayan octopus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

MODELTEST: testing the model of DNA substitution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

The squid accessory nidamental gland: ultrastructure and association with bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

17 March 2017

Evolution of Conus peptide toxins: analysis of Conus californicus Reeve, 1844

1 reference

https://api.crossref.org/works/10.1186/1471-2148-12-129

22 April 2017

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

7 April 2017

Bayesian phylogenetic analysis of combined data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

7 April 2017

DAMBE: software package for data analysis in molecular biology and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

7 April 2017

Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

7 April 2017

Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

7 April 2017

Biodiversity among luminescent symbionts from squid of the genera Uroteuthis, Loliolus and Euprymna (Mollusca: Cephalopoda).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Morphological and genetic divergence in Swedish postglacial stickleback (Pungitius pungitius) populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Bioluminescence in the sea.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Molecular inference of phylogenetic relationships among Decapodiformes (Mollusca: Cephalopoda) with special focus on the squid order Oegopsida

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Cephalopod dynamic camouflage: bridging the continuum between background matching and disruptive coloration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Cysteine-390 is the binding site of luminous substance with symplectin, a photoprotein from Okinawan squid, Symplectoteuthis oualaniensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Mitochondrial genome structure and evolution in the living fossil vampire squid, Vampyroteuthis infernalis, and extant cephalopods.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Deciphering ancient rapid radiations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Virtual Ribosome--a comprehensive DNA translation tool with support for integration of sequence feature annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Enlightenment of old ideas from new investigations: more questions regarding the evolution of bacteriogenic light organs in squids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Light production by the arm tips of the deep-sea cephalopod Vampyroteuthis infernalis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Actin gene family evolution and the phylogeny of coleoid cephalopods (Mollusca: Cephalopoda).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Egg brooding by deep-sea octopuses in the North Pacific Ocean

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

A new niche for Vibrio logei, the predominant light organ symbiont of squids in the genus Sepiola.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Correlated evolution and independent contrasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Phylogeny of cephalopods inferred from mitochondrial DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

3 June 2018

Convergent evolution in mechanical design of lamnid sharks and tunas

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-129

21 January 2018

Metabolism of pelagic cephalopods as a function of habitat depth: a reanalysis using phylogenetically independent contrasts

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-129

21 January 2018

Enigma of the Abundant Water-Soluble Cytoplasmic Proteins of the Cornea

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-129

21 January 2018

Bioluminescence reaction catalyzed by membrane-bound luciferase in the "firefly squid," Watasenia scintillans

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-129

21 January 2018

Computing Bayes factors using thermodynamic integration.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-12-129

21 January 2018

Mesopelagic cephalopods switch between transparency and pigmentation to optimize camouflage in the deep

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

27 November 2018

Are there physiological and biochemical adaptations of metabolism in deep-sea animals?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

27 November 2018

Behaving in the dark: locomotor, chromatic, postural, and bioluminescent behaviors of the deep-sea squid Octopoteuthis deletron young 1972.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

27 November 2018

Lateral plate evolution in the threespine stickleback: getting nowhere fast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3733422

27 November 2018

Adaptation and the comparative method

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A molecular phylogeny of the Octopoda (Mollusca: Cephalopoda) evaluated in light of morphological evidence

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chemical Defense in the Egg Masses of Benthic Invertebrates: An Assessment of Antibacterial Activity in 39 Mollusks and 4 Polychaetes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extensive mitochondrial gene arrangements in coleoid Cephalopoda and their phylogenetic implications

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

LIKELIHOOD OF ANCESTOR STATES IN ADAPTIVE RADIATION.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EVOLUTION OF PELVIC REDUCTION IN THREESPINE STICKLEBACK FISH: A TEST OF COMPETING HYPOTHESES

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial symbionts colonize the accessory nidamental gland of the squid Loligo opalescens via horizontal transmission

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antimicrobial activity in the microbial community of the accessory nidamental gland and egg cases of Loligo pealei (Cephalopoda: Loliginidae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New evidence for bacterial diversity in the accessory nidamental gland of the squid (Loligo pealei)

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Anatomy and Morphology of the Adult Bacterial Light Organ of Euprymna scolopes Berry (Cephalopoda:Sepiolidae).

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ULTRASTRUCTURE OF A CEPHALOPOD PHOTOPHORE. I. STRUCTURE OF THE PHOTOGENIC TISSUE.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22839506

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2148-12-129

0 references

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-12-129

PMC publication ID

0 references

PubMed publication ID

0 references

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q28687624&oldid=2177829819"