(Q28744186)

English

Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish

scientific article (publication date: 2011)

In more languages

Statements

scholarly article

0 references

Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish (English)

0 references

cis-regulatory element

1 reference

based on heuristic

inferred from title

Mathieu Blanchette

6

0 references

Joachim Wittbrodt

object named as

Joachim Wittbrodt

7

0 references

author name string

Emmanuel Mongin

1

0 references

Thomas O Auer

2

0 references

Franck Bourrat

3

0 references

Franziska Gruhl

4

0 references

Ken Dewar

5

0 references

Laurence Ettwiller

8

0 references

language of work or name

0 references

publication date

2011

0 references

0 references

6

0 references

5

0 references

e19747

0 references

copyright license

Creative Commons Attribution 4.0 International

27 May 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

ChIP-Seq identification of weakly conserved heart enhancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

The medaka draft genome and insights into vertebrate genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

The Zebrafish Information Network: the zebrafish model organism database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

Highly conserved non-coding sequences are associated with vertebrate development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

Ultraconserved Elements in the Human Genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

EnsMart: a generic system for fast and flexible access to biological data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

Human-mouse alignments with BLASTZ

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

Initial sequencing and comparative analysis of the mouse genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

Initial sequencing and analysis of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

The green fluorescent protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

16 March 2017

Aligning multiple genomic sequences with the threaded blockset aligner

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

7 April 2017

In vivo enhancer analysis of human conserved non-coding sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

7 April 2017

Spatiotemporal dynamics of RhoA activity in migrating cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

7 April 2017

Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Transposons as tools for enhancer trap screens in vertebrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Meganuclease and transposon mediated transgenesis in medaka

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

4DXpress: a database for cross-species expression pattern comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Intracellular pH sensors: design principles and functional significance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Large-scale enhancer detection in the zebrafish genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Modulefinder: a tool for computational discovery of cis regulatory modules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Tol2 transposon-mediated enhancer trap to identify developmentally regulated zebrafish genes in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Stages of normal development in the medaka Oryzias latipes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

cis-Regulatory control circuits in development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Imaging neuronal activity during zebrafish behavior with a genetically encoded calcium indicator.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

The heat-inducible zebrafish hsp70 gene is expressed during normal lens development under non-stress conditions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

BAC to the future: the use of bac transgenic mice for neuroscience research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Circularly permuted green fluorescent proteins engineered to sense Ca2+.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Eph signalling functions downstream of Val to regulate cell sorting and boundary formation in the caudal hindbrain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

The POU domain transcription factor Brn-2 is required for the determination of specific neuronal lineages in the hypothalamus of the mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Purification and characterization of the in vitro activity of I-Sce I, a novel and highly specific endonuclease encoded by a group I intron

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

3 June 2018

Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019747

21 January 2018

PReMod: a database of genome-wide mammalian cis-regulatory module predictions

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019747

21 January 2018

Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019747

21 January 2018

Zebrafish Hoxb1a regulates multiple downstream genes including prickle1b

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019747

21 January 2018

vhnf1 integrates global RA patterning and local FGF signals to direct posterior hindbrain development in zebrafish.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019747

21 January 2018

Transgenesis in fish: efficient selection of transgenic fish by co-injection with a fluorescent reporter construct.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019747

21 January 2018

Numerous potentially functional but non-genic conserved sequences on human chromosome 21

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0019747

21 January 2018

Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

27 November 2018

Medaka eyeless is the key factor linking retinal determination and eye growth.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

27 November 2018

valentino: a zebrafish gene required for normal hindbrain segmentation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3103512

27 November 2018

Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish

1 reference

https://pubmed.ncbi.nlm.nih.gov/21637758

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0019747

0 references

2011PLoSO...619747M

0 references

release_hxuzkdhsn5ah3dmwibxdez44ku

1 reference

https://api.fatcat.wiki/v0/release/hxuzkdhsn5ah3dmwibxdez44ku

24 November 2022

based on heuristic

mapped directly with Wikidata item

0 references

0 references

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q28744186&oldid=1869278882"