(Q28749244)

3

0 references

Juan Antonio Vizcaíno

1

0 references

Lennart Martens

Lennart Martens

8

0 references

Harald Barsnes

4

Harald Barsnes

0 references

Rick H. Cote

2

Richard Côté

0 references

Jonathan Rameseder

6

Jonathan Rameseder

0 references

author name string

Joseph M Foster

A guide to the Proteomics Identifications Database proteomics data repository

5

0 references

language of work or name

English

0 references

publication date

January 2010

0 references

published in

Nucleic Acids Research

0 references

volume

38

0 references

page(s)

D736-42

0 references

issue

Database issue

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Human Proteinpedia: a unified discovery resource for proteomics research

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

InterPro: the integrative protein signature database

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

PRIDE: new developments and new datasets

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

PRIDE: a public repository of protein and peptide identifications for the proteomics community

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

E-MSD: improving data deposition and structure quality

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

The proteome of Saccharomyces cerevisiae mitochondria

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

The International Protein Index: an integrated database for proteomics experiments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

BioMart--biological queries made easy

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Reactome knowledgebase of human biological pathways and processes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

The Universal Protein Resource (UniProt) 2009

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

NCBI Peptidome: a new public repository for mass spectrometry peptide identifications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

PRIDE Converter: making proteomics data-sharing easy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Recent developments in public proteomic MS repositories and pipelines.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

The Rat Genome Database 2009: variation, ontologies and pathways

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

The PRIDE proteomics identifications database: data submission, query, and dataset comparison

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Analyzing large-scale proteomics projects with latent semantic indexing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Public proteomic MS repositories and pipelines: available tools and biological applications.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

A la carte proteomics with an emphasis on gel-free techniques

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Annotating the human proteome: beyond establishing a parts list

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

High dynamic range characterization of the trauma patient plasma proteome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

PRIDE: the proteomics identifications database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Open source system for analyzing, validating, and storing protein identification data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808904

Using the Proteomics Identifications Database (PRIDE).

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP964

Database on Demand - an online tool for the custom generation of FASTA-formatted sequence databases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP964

A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP964

7(th) HUPO World Congress of Proteomics: launching the second phase of the HUPOPlasma Proteome Project (PPP-2) 16-20 August 2008, Amsterdam, The Netherlands.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP964

The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP964

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP964

Reporting protein identification data: the next generation of guidelines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP964

Quantitative proteomics analysis of the secretory pathway

21 January 2018

1 reference

12 December 2020

Democratizing proteomics data

1 reference

12 December 2020

Credit where credit is overdue

1 reference

12 December 2020

Bioinformatics: Bringing it all together technology feature

1 reference

12 December 2020

Genome analysis at your fingertips

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1093/NAR/GKP964

Thou shalt share your data

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1093/NAR/GKP964

Identifiers

DOI

10.1093/NAR/GKP964

0 references

DBLP publication ID

journals/nar/VizcainoCRBFRHM10

1 reference