(Q28750314)

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Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity

scientific article (publication date: 16 October 2009)

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scholarly article

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Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity (English)

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Mark Bender Gerstein

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object named as

Mark B Gerstein

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object named as

Deyou Zheng

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author name string

Yuen-Jong Liu

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Suganthi Balasubramanian

3

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Nicholas Carriero

4

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Ekta Khurana

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Rebecca Robilotto

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language of work or name

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publication date

16 October 2009

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480

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Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

1 reference

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16 March 2017

A computational approach for identifying pseudogenes in the ENCODE regions

1 reference

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16 March 2017

Iterative gene prediction and pseudogene removal improves genome annotation

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16 March 2017

Emergence of young human genes after a burst of retroposition in primates

1 reference

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16 March 2017

Initial sequence of the chimpanzee genome and comparison with the human genome

1 reference

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16 March 2017

Recognizing the pseudogenes in bacterial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

16 March 2017

HOPPSIGEN: a database of human and mouse processed pseudogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

16 March 2017

Glyceraldehyde 3-phosphate dehydrogenase-S, a sperm-specific glycolytic enzyme, is required for sperm motility and male fertility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

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Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

1 reference

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16 March 2017

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

1 reference

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16 March 2017

A genome-wide survey of human pseudogenes

1 reference

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16 March 2017

Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

16 March 2017

Pseudogenes: Are They “Junk” or Functional DNA?

1 reference

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16 March 2017

Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates

1 reference

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Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

1 reference

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S phase activation of the histone H2B promoter by OCA-S, a coactivator complex that contains GAPDH as a key component

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

16 March 2017

Initial sequencing and comparative analysis of the mouse genome

1 reference

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16 March 2017

Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

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Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

16 March 2017

Initial sequencing and analysis of the human genome

1 reference

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The genome sequence of Drosophila melanogaster

1 reference

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Genome sequence of the nematode C. elegans: a platform for investigating biology

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

16 March 2017

Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

16 March 2017

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

16 March 2017

Pseudogenes as a paradigm of neutral evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

16 March 2017

Isolation and complete sequence of a functional human glyceraldehyde-3-phosphate dehydrogenase gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

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The origin and evolution of model organisms

1 reference

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7 April 2017

The complete human olfactory subgenome

1 reference

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7 April 2017

Human LINE retrotransposons generate processed pseudogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

7 April 2017

Vertebrate pseudogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

7 April 2017

Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

7 April 2017

Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

9 May 2017

Primate segmental duplications: crucibles of evolution, diversity and disease

1 reference

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3 June 2018

Genome-wide identification of pseudogenes capable of disease-causing gene conversion.

1 reference

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The nature and dynamics of bacterial genomes.

1 reference

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3 June 2018

Integrated pseudogene annotation for human chromosome 22: evidence for transcription

1 reference

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3 June 2018

Multifaceted roles of glycolytic enzymes.

1 reference

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3 June 2018

Psi-Phi: exploring the outer limits of bacterial pseudogenes.

1 reference

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3 June 2018

Large-scale analysis of pseudogenes in the human genome

1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

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1 reference

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1 reference

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1 reference

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1 reference

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3 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

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Role of the glycolytic protein, glyceraldehyde-3-phosphate dehydrogenase, in normal cell function and in cell pathology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2770531

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19835609

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19835609

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19835609

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19835609

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19835609

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/1471-2164-10-480

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-10-480

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