(Q28817671)

6

0 references

author name string

Sheerli Kruger Ben Shabat

1

0 references

Goor Sasson

2

0 references

Adi Doron-Faigenboim

3

0 references

Thomer Durman

4

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Shamay Yaacoby

5

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Bryan A White

7

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Naama Shterzer

8

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Itzhak Mizrahi

Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International

9

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language of work or name

English

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publication date

December 2016

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published in

The ISME Journal

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volume

10

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issue

12

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page(s)

2958-2972

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copyright license

start time

6 May 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Two different bacterial community types are linked with the low-methane emission trait in sheep

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Potential role of the bovine rumen microbiome in modulating milk composition and feed efficiency

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

QIIME allows analysis of high-throughput community sequencing data

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

The NIH Human Microbiome Project

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Fast and accurate short read alignment with Burrows-Wheeler transform

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

A core gut microbiome in obese and lean twins

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Food, livestock production, energy, climate change, and health

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

KEGG for integration and interpretation of large-scale molecular data sets

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Search and clustering orders of magnitude faster than BLAST

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Richness of human gut microbiome correlates with metabolic markers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

The rumen microbial metagenome associated with high methane production in cattle

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Shifts in metabolic hydrogen sinks in the methanogenesis-inhibited ruminal fermentation: a meta-analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Soil biodiversity and soil community composition determine ecosystem multifunctionality

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Phylogenetic distribution of three pathways for propionate production within the human gut microbiota.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Exploring the bovine rumen bacterial community from birth to adulthood

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

MOCAT: a metagenomics assembly and gene prediction toolkit

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Lactate and acrylate metabolism by Megasphaera elsdenii under batch and steady-state conditions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Composition and similarity of bovine rumen microbiota across individual animals

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Impact of feed efficiency and diet on adaptive variations in the bacterial community in the rumen fluid of cattle

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Using extreme phenotype sampling to identify the rare causal variants of quantitative traits in association studies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

FragGeneScan: predicting genes in short and error-prone reads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Livestock production: recent trends, future prospects

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Molecular basis for residual feed intake in beef cattle

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Studies on ruminant saliva. 1. The composition and output of sheep's saliva

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Ionophores: their use as ruminant growth promotants and impact on food safety

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Factors that alter rumen microbial ecology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Why are ruminal cellulolytic bacteria unable to digest cellulose at low pH?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Monensin Supplementation and in vivo Methane Production by Steers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

Methods for Dietary Fiber, Neutral Detergent Fiber, and Nonstarch Polysaccharides in Relation to Animal Nutrition

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5148187

On the origin of cattle: How aurochs became cattle and colonized the world

3 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.62

Meta-analysis of the effects of monensin in beef cattle on feed efficiency, body weight gain, and dry matter intake.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.62

The role of pH in determining the species composition of the human colonic microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.62

EFFECTS OF BIODIVERSITY ON ECOSYSTEM FUNCTIONING: A CONSENSUS OF CURRENT KNOWLEDGE

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.62

Accuracy of genomic predictions of residual feed intake and 250-day body weight in growing heifers using 625,000 single nucleotide polymorphism markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.62

The Bovine Ruminal Fluid Metabolome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.62

Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.62

Effect of monensin feeding and withdrawal on populations of individual bacterial species in the rumen of lactating dairy cows fed high-starch rations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.62

Relationships of feedlot feed efficiency, performance, and feeding behavior with metabolic rate, methane production, and energy partitioning in beef cattle

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27152936

12 December 2020

inferred from PubMed ID database lookup

Physiological basis for residual feed intake

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27152936

12 December 2020

inferred from PubMed ID database lookup

The importance of pH in the regulation of ruminal acetate to propionate ratio and methane production in vitro

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27152936

12 December 2020

inferred from PubMed ID database lookup

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2016.62

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/ISMEJ.2016.62

1 reference

Dimensions Publication ID

2546514

1033046735

0 references

2546514

1 reference

1 reference

1 reference