(Q29013770)

1 July 2019

title

Methods for transcriptomic analyses of the porcine host immune response: Application to Salmonella infection using microarrays (English)

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1 July 2019

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9

V. Honavar

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DOI.org query endpoint

23 March 2017

author name string

C K Tuggle

1

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1 July 2019

S M D Bearson

2

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1 July 2019

J J Uthe

3

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1 July 2019

T H Huang

4

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1 July 2019

O P Couture

5

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1 July 2019

Y F Wang

6

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1 July 2019

D Kuhar

7

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1 July 2019

J K Lunney

8

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1 July 2019

language of work or name

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14 October 2010

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1 July 2019

Veterinary Immunology and Immunopathology

published in

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1 July 2019

volume

138

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1 July 2019

issue

4

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1 July 2019

page(s)

280-291

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1 July 2019

describes a project that uses

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African swine fever virus multigene family 360 and 530 genes affect host interferon response

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https://api.crossref.org/works/10.1016%2FJ.VETIMM.2010.10.006

Identification of genes transcribed by Actinobacillus pleuropneumoniae in necrotic porcine lung tissue by using selective capture of transcribed sequences

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Differential expression in lung and bronchial lymph node of pigs with high and low responses to infection with porcine reproductive and respiratory syndrome virus

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Heterogeneity in lipopolysaccharide responsiveness of endothelial cells identified by gene expression profiling: role of transcription factors

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Clustering methods for microarray gene expression data

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MicroRNAs: novel regulators during the immune response.

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Gene expression profiling of avian macrophage activation

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The nature of systems biology

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Expression of Toll-like receptors, interleukin 8, macrophage migration inhibitory factor, and osteopontin in tissues from pigs challenged with Salmonella enterica serovar Typhimurium or serovar Choleraesuis.

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In vitro down regulation of proinflammatory cytokines induced by LPS tolerance in pig CD14+ cells

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Transcriptome profiling of the small intestinal epithelium in germfree versus conventional piglets

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ANEXdb: an integrated animal ANnotation and microarray EXpression database

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Localized multigene expression patterns support an evolving Th1/Th2-like paradigm in response to infections with Toxoplasma gondii and Ascaris suum

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Predicting transcription factor binding sites using local over-representation and comparative genomics

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Genomic dissection of mucosal immunobiology in the porcine small intestine.

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Transcriptomic analysis of the dialogue between Pseudorabies virus and porcine epithelial cells during infection

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Detection of functional DNA motifs via statistical over-representation

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Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.

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Identification of host encoded microRNAs interacting with novel swine-origin influenza A (H1N1) virus and swine influenza virus

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Molecular characterisation of the early response in pigs to experimental infection with Actinobacillus pleuropneumoniae using cDNA microarrays

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The Immunological Genome Project: networks of gene expression in immune cells.

7 January 2021

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

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Gene expression microarrays: glimpses of the immunological genome.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VETIMM.2010.10.006

Salmonella enterica serovar Choleraesuis infection of the porcine jejunal Peyer's patch rapidly induces IL-1beta and IL-8 expression

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Insights into host responses against pathogens from transcriptional profiling.

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Development of a macroarray to specifically analyze immunological gene expression in swine.

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Global transcriptional profiles in peripheral blood mononuclear cell during classical swine fever virus infection

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Nitric oxide-modulated marker gene expression of signal transduction pathways in lung endothelial cells

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Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant.

7 January 2021

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Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency.

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InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

7 January 2021

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Bayesian infinite mixture model based clustering of gene expression profiles

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Apoptosis and porcine reproductive and respiratory syndrome virus

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A mixed-model approach for the analysis of cDNA microarray gene expression data from extreme-performing pigs after infection with Actinobacillus pleuropneumoniae.

7 January 2021

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Gene expression profiling of porcine peripheral blood leukocytes after infection with Actinobacillus pleuropneumoniae.

7 January 2021

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Development of a porcine small intestinal cDNA micro-array: characterization and functional analysis of the response to enterotoxigenic E. coli.

7 January 2021

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Analysis of gene expression patterns by microarray hybridization in blood mononuclear cells of SLA-DRB1 defined Canadian Yorkshire pigs

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cDNA microarray analysis of host-pathogen interactions in a porcine in vitro model for Toxoplasma gondii infection

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MicroRNAs in the immune response

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Computational analysis of microarray data

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Microarray data normalization and transformation

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Th-1/Th-2 type cytokine profiles of pig T-cells cultured with antigen-treated monocyte-derived dendritic cells

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Toll-like receptor, MHC II, B7 and cytokine expression by porcine monocytes and monocyte-derived dendritic cells in response to microbial pathogen-associated molecular patterns.

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Gene expression microarray data analysis demystified

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Gene expression response of the rat small intestine following oral Salmonella infection.

7 January 2021

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Salmonella typhimurium infection and lipopolysaccharide stimulation induce similar changes in macrophage gene expression.

7 January 2021

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Deciphering the involvement of innate immune factors in the development of the host response to PRRSV vaccination

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Deciphering the porcine intestinal microRNA transcriptome

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Effects of Salmonella enterica serovar Typhimurium, or serovar Choleraesuis, Lactobacillus reuteri and Bacillus licheniformis on chemokine and cytokine expression in the swine jejunal epithelial cell line, IPEC-J2.

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Assessment of the swine protein-annotated oligonucleotide microarray.

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Statistical significance for genomewide studies

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Time course differential gene expression in response to porcine circovirus type 2 subclinical infection.

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Advances in swine transcriptomics

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Porcine differential gene expression in response to Salmonella enterica serovars Choleraesuis and Typhimurium.

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Analysis of porcine differential gene expression following challenge with Salmonella enterica serovar Choleraesuis using suppression subtractive hybridization

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Correlating blood immune parameters and a CCT7 genetic variant with the shedding of Salmonella enterica serovar Typhimurium in swine

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10.1016/J.VETIMM.2010.10.006

Identifiers

DOI

1 reference

1 July 2019

PMC publication ID

6545292

1 reference

1 July 2019

PubMed publication ID

21036404

1 reference

1 July 2019